Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_005882.1 Length=36748 Score E Sequences producing significant alignments: (Bits) Value seq104575 152 1e-32 seq7292 134 3e-27 seq23360 107 4e-19 seq6532 95.1 3e-15 seq55122 87.8 4e-13 seq100937 80.6 6e-11 >seq104575 Length=316 Score = 152 bits (168), Expect = 1e-32 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22586 GTCGTGAAGTCGGCGGTGATCGGCTTGATCGGCACCGCACCGATCGGGCCGGTCAATACG 22645 || ||||||||||| ||||||| |||||| ||||||||||| | ||||||||| || || Sbjct 19 GTGGTGAAGTCGGCCGTGATCGCCTTGATTGGCACCGCACCCACCGGGCCGGTGAAGACC 78 Query 22646 CCGGTGCAGTCGCTGTCCGACGTCGACGCGGCGCAGTTCGGCCCGCAGCTCGCCGGCTTC 22705 | | | ||||||| |||| ||||||| || ||||||||| | || | ||||| ||| Sbjct 79 CTGACGGTGTCGCTGAACGACATCGACGCCGCCCAGTTCGGCACTCATTTGGCCGGGTTC 138 Query 22706 ACGATCCCGCAAGCGCTCGACGCGGTCTACGACTACGGCAGCGGGACGGTGATCGTGATC 22765 | || || | || || |||| ||||||||| |||| ||| ||||| || || | Sbjct 139 AGCATTCCCGAGGCCCTGGACGGCATCTACGACTTCGGCGCCGGCACGGTCATTGTCTAC 198 Query 22766 AACGTGCTCGACCCGGCCGTACAC 22789 ||||||||||| ||||| || ||| Sbjct 199 AACGTGCTCGATCCGGCGGTCCAC 222 >seq7292 Length=1256 Score = 134 bits (148), Expect = 3e-27 Identities = 344/514 (67%), Gaps = 21/514 (4%) Strand=Plus/Plus Query 17357 GCAAGGGCTACGAGATCACCTGGGATTGGGAGGAGCTTTGGCAGGACGCCCAGGCGAAGG 17416 |||| ||||| | | | |||||||||||| |||| | | | ||||| | | | Sbjct 361 GCAAAGGCTATGCGGTTACCTGGGATTGGCAGGACATGCTCGATGCGGCCCACGACCAAG 420 Query 17417 CATTTACGGTTGCCAAGGTCACGCGCCTGGACATCCTGCAGGACATTCGCAACGCGGTCG 17476 | || || |||||||||| || ||||||||| | || |||||| ||| | | | | Sbjct 421 CGTTCACCGTTGCCAAGGCCATGCGCCTGGATCTGCTCTCGGACATCCGCGAATCATTGG 480 Query 17477 AAACCGCAAT-CAGCGAAGGCAAGACGTTGCGATGGTTCACGAAAGAGCTGACGCCCGTA 17535 | | ||| | ||| ||||||||||| ||| |||||| || || ||| ||| || Sbjct 481 AGAGCGCCCTGCAG-GAAGGCAAGACCCTGCAGCAGTTCACCAAGGAACTGCAGCCTGTC 539 Query 17536 CT---GCAATCCAAGGGCTGGTGGGGAAAGCAGGAGCACGTCGACCAGGATACC--GGCG 17590 || |||| ||| || |||||||| ||||||| | ||||| ||| || ||| Sbjct 540 CTGGAGCAA--CAA-GGTTGGTGGGGCAAGCAGGTCCTGGTCGA-CAG----CCAGGGCA 591 Query 17591 AAGTCAACCAGGTTCAGCTCGGCAGCCCGTGGCGCCTGCAGACCATCTACCGAACGAACC 17650 | | | ||| ||||| || ||||| | || || |||| ||||||| || |||| Sbjct 592 ATGCGGAGATGGTCCAGCTGGGTAGCCCACGCCGGCTTAAGACGATCTACCAGACCAACC 651 Query 17651 TGCAGACGGCCTACATGGCGGGCCGCTACGCCGAGCAAATGGCGAAC---GTCGACGATC 17707 |||||| ||||| ||||| || ||| | ||| |||| | || ||||| | Sbjct 652 TGCAGAGCGCCTATATGGCCGGTCGCAAATCCG---CCATGGAGGACACGGTCGAGACCC 708 Query 17708 GGCCGTACTGGATGTACGTGGCGATCCTCGACAGCCGCACGCGCCCGAGCCATCGGGCAA 17767 |||||||||| ||| | ||| | | || || || || || |||||| || Sbjct 709 ATCCGTACTGGAGCTACATCGCGGTGATGGATGGCAAGACCCGACCTAGCCATGCTGCGC 768 Query 17768 TGAACGGCAAGGTGTTCCGTTACGACGATCCGTTCTGGCAGTCGTTCTACCCGCCGAACG 17827 | ||||| ||||| ||| | ||||| ||| ||||| | ||| |||||| |||| Sbjct 769 TCAACGGTGTGGTGTACCGACATGACGACCCGATCTGGTCCACCATCTTCCCGCCCAACG 828 Query 17828 GCTGGGGCTGCCGGTGCCGCGTGGTGGCGCTGTC 17861 | | |||||| |||||||| ||||||||| Sbjct 829 GGTTTAACTGCCGCTGCCGCGTAACGGCGCTGTC 862 >seq23360 Length=738 Score = 107 bits (118), Expect = 4e-19 Identities = 111/142 (78%), Gaps = 5/142 (4%) Strand=Plus/Plus Query 4221 ACATTGCCTCGCGCACGTAGCGAATATCGGGGCTGACGAACATGTCTTCGTGCGAC-TGG 4279 |||| | ||| || |||||||| ||||||||||| || ||||||||||| ||| | || Sbjct 31 ACATGGACTCACGGACGTAGCGGATATCGGGGCTTACATACATGTCTTCG-GCGTCCTGC 89 Query 4280 ATGTCATCCGCGAACGGGTCACGGAACAGGCCGAAGTGCTTACGGGTGGCTGGTGCGAGA 4339 | ||||| || ||| || ||||| |||||||| || || ||||||||||||| || Sbjct 90 AGCTCATC---GAGCGGATCGCGGAAAAGGCCGAATTGTTTTCGGGTGGCTGGTGTCAGC 146 Query 4340 ACCTGTTTGCGCAGTAACATGG 4361 ||||||||| || || ||||| Sbjct 147 ACCTGTTTGGCCATTAGCATGG 168 >seq6532 Length=1314 Score = 95.1 bits (104), Expect = 3e-15 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 27130 GGCGGGATGCTGCTGGCCCGCGTCCTGGGCGGCCAGCTCG-TGAACGGCCTGATGCTGGC 27188 |||||| || |||| | | || ||||||||| | || | || ||| ||| |||||| Sbjct 738 GGCGGGCTGATGCTCGGCAAGGTGCTGGGCGGC-ACCTTGCTGTTCGGGTTGAAGCTGGC 796 Query 27189 CGGGCGCGCGGTGCTCTGGCTCGGGCGCGCGCTGATGCTCAATCCGATCGGGATTGCCAT 27248 || | || || || |||||||| || |||||| || | || || ||||| | | Sbjct 797 AGGCCAAGCTGTCCTGTGGCTCGGCCGGGCGCTGCTGATGAACCCCATCGGCCTGTTGGT 856 Query 27249 CACCGCGATCGCGGTCGGCGCGTACCTCATCTACCGCTACTGGACGCCGATCAAGCAGTT 27308 ||| | |||||| | | || ||||| ||||||||||||||| ||| |||||| || Sbjct 857 CACTGGCATCGCGCTGAGTGCATACCTGATCTACCGCTACTGGGAGCCTATCAAGGGCTT 916 Query 27309 CTTCGGGGGCATCTGG 27324 |||||| || ||||| Sbjct 917 CTTCGGTGGGCTCTGG 932 >seq55122 Length=457 Score = 87.8 bits (96), Expect = 4e-13 Identities = 213/323 (66%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 5535 CTGAAACTTGAGGCCCGGTTCGAACTTGCGCTCGATGAGGTTCCGCGCGTTCTCAACCTG 5594 ||| | ||| | | ||| ||||||| |||||| | | ||| |||| | |||||||| Sbjct 332 CTGCAGCTTCAAGGCCGACTCGAACTCGCGCTCAACAATGTTGTGCGCCTGTTCAACCTG 273 Query 5595 TCCGGTGGCACGGGCGTTGCCAACCTTGTGGACAATCAGCTCGATTCCGAGCGAGCGGCA 5654 || |||| || ||||| || ||||||| || ||||||||||| | |||| ||| Sbjct 272 GCCTTTGGCGCGAGCGTTACCCACCTTGTTGATGATCAGCTCGATGCTCAGCGCCTTGCA 213 Query 5655 CAGGTTGCGCGTCATGGACGCCGTGTTCGCCGATCCGGCGTCGAGCATCAGAATGCGTGG 5714 || |||||| || | || || | |||| || | ||| ||| | ||| || Sbjct 212 CAAGTTGCGGAAGATCGCCGAAGTCATGGCCGCACCAGGGTCCGTCATGATGATGAACGG 153 Query 5715 CACACCGTGCAGCAGGTCGGCCCCGCCGCGCTCCTGCATAGCGTTGATGAGCGTCGAGCA 5774 |||||| || | | ||| |||| |||| ||||| |||| | | ||| Sbjct 152 CACACCATGGAAGGGATCGTTTTCGCCACGCTTTTGCATGCAACTGATCAACACGTTGCA 93 Query 5775 GAGGTTCTCGCCCGATTCCGCACCCATGACGTACTCGGTGTAAATCCAGTCGCTCGCGTG 5834 ||||| || | ||||| || |||| ||||||| || || | |||| | ||| Sbjct 92 CAGGTTTTCCGCAGATTCGGCGCCCAGCACGTACTGCACATAGATGGTGCCGCTGGTGTG 33 Query 5835 GTCGGAGATTTCGTAGCTCCACA 5857 |||| ||| |||||| ||||| Sbjct 32 ATCGGTGATGACGTAGCGCCACA 10 >seq100937 Length=322 Score = 80.6 bits (88), Expect = 6e-11 Identities = 167/249 (67%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 20056 GATCCGGTGCTGACGAATCTCGCGATCGGTTACACGAACGCCGAATTCATCGGCCAGAGC 20115 || ||||| ||||| || || || || ||| || || | |||||||| || Sbjct 1 GACCCGGTCCTGACCAACCTGGCCCGTGGCTACCGCAATGCGCAGTTCATCGGTGAGGCG 60 Query 20116 CTGATGCCGGTCGTCGAAGTGGAAAAGGAAGGCGGCAAGATTCCGAAGTTCGGCAAGGAA 20175 ||| | || ||| | |||| ||||||| ||| | |||||| ||||||||||||| Sbjct 61 CTGTTCCCCATCGCCCTGATGGACAAGGAAGCCGGGATCATTCCGCTGTTCGGCAAGGAA 120 Query 20176 TCGTTCCGCCTCTACAAGACGGAACGCGCGCTGCGCGCCCGGTCGAATCGAATGAACCCT 20235 ||||| | ||| | || ||||| || || ||||||| ||| || ||||| || Sbjct 121 GCGTTCGAGGTGTACGACACCGAACGTGCACTCCGCGCCCAGTCCAACATCATGAATCCA 180 Query 20236 GAAGACCTCGGCAGCATCGACATCGTCCTCGACGAACACGATCTCGAGTATCCGATCGAC 20295 || || | || | || | ||||| ||||| || ||| ||||| ||||| Sbjct 181 GATGATGTTGGTGAACTGGATGTGGTCCTGCGTGAACATGACATCGCCTATCCAGTCGAC 240 Query 20296 TACCGCGAA 20304 ||||||||| Sbjct 241 TACCGCGAA 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117172045820480