Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq110887 113 2e-20 seq138054 105 3e-18 seq123651 105 3e-18 seq53934 105 3e-18 seq158476 102 4e-17 seq154588 102 4e-17 seq203357 100 1e-16 seq122810 100 1e-16 seq12975 98.7 5e-16 seq187549 96.9 2e-15 seq49093 95.1 6e-15 seq202867 91.5 8e-14 seq8630 91.5 8e-14 seq75618 87.8 9e-13 >seq110887 Length=305 Score = 113 bits (124), Expect = 2e-20 Identities = 81/94 (86%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 11431 ATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 ||| | |||||| | |||| ||||||||||||| | | |||||||| ||||||||||| Sbjct 211 ATAAAAAATTAAATATAAATAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCG 270 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAAT 11524 |||||||||||||||||| |||| |||||||||| Sbjct 271 TTATTAGCACGACGCTCTAACCAGCTGAGCTAAT 304 >seq138054 Length=3190 Score = 105 bits (116), Expect = 3e-18 Identities = 77/89 (87%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| | | ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 392 ATAAAAAAA-ACACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 450 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||| |||| |||||||||| ||||| Sbjct 451 ACGCTCTAACCAGCTGAGCTAATAGGCCG 479 >seq123651 Length=866 Score = 105 bits (116), Expect = 3e-18 Identities = 77/89 (87%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| ||| | |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 395 AATAAATAATTAG-TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 337 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 336 GACGCTCTAACCAGCTGAGCTAATAGGCC 308 >seq53934 Length=463 Score = 105 bits (116), Expect = 3e-18 Identities = 77/89 (87%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||| || | ||||| |||||||| | | |||||||| ||||||||||||||||||||| Sbjct 375 AATAGAATAACAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 433 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 434 GACGCTCTAACCAGCTGAGCTAATAGGCC 462 >seq158476 Length=4838 Score = 102 bits (112), Expect = 4e-17 Identities = 77/91 (85%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| || |||||||| | | |||||||| |||||||||||||||||||| Sbjct 2231 AATAAAAAAACA---TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCAC 2175 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||| |||| |||||||||| |||||| Sbjct 2174 GACGCTCTAACCAGCTGAGCTAATAGGCCGT 2144 >seq154588 Length=4628 Score = 102 bits (112), Expect = 4e-17 Identities = 77/91 (85%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| |||| ||| ||||||||| | | |||||||| ||||||||||||||||||| Sbjct 1870 TTAAAAAAACATC----TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 1815 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| |||||||||| |||| Sbjct 1814 ACGACGCTCTAACCAGCTGAGCTAATAGGCC 1784 >seq203357 Length=363 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 1 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 60 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 61 TGAGCTAATAGGCC 74 >seq122810 Length=2417 Score = 100 bits (110), Expect = 1e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 1 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 60 Query 11516 TGAGCTAATGGGCC-GTCGACG-ATTGTGAT 11544 ||||||||| |||| || || | ||| |||| Sbjct 61 TGAGCTAATAGGCCAGTTGATGAATTTTGAT 91 >seq12975 Length=984 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/85 (86%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 754 AAAAAT--AATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 697 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 696 CTCTAACCAGCTGAGCTAATAGGCC 672 >seq187549 Length=799 Score = 96.9 bits (106), Expect = 2e-15 Identities = 77/91 (85%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || |||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 244 AAAAAATTAA--TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGAC 301 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 ||||| |||| |||||||||| |||| |||| Sbjct 302 GCTCTAACCAGCTGAGCTAATAGGCC-TCGA 331 >seq49093 Length=489 Score = 95.1 bits (104), Expect = 6e-15 Identities = 78/94 (83%), Gaps = 4/94 (4%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||||| |||||||| || |||||||| | | |||||||| |||||||||||||| Sbjct 90 AGAAT--ATAAAAAAGAAA--TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTAT 35 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGC 11528 |||||||||||||| |||| |||||||||| ||| Sbjct 34 TAGCACGACGCTCTAACCAGCTGAGCTAATAGGC 1 >seq202867 Length=5812 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||| | Sbjct 5155 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 5096 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 5095 TGAGCTAATAGGCC 5082 >seq8630 Length=1174 Score = 91.5 bits (100), Expect = 8e-14 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC- 11529 |||||||| ||||||||||||||||||||||||||||| |||| |||||||||| |||| Sbjct 8 TCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCA 67 Query 11530 GTCGACGATTGTGA 11543 | || || ||||| Sbjct 68 CTTGATGACTGTGA 81 >seq75618 Length=380 Score = 87.8 bits (96), Expect = 9e-13 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| || || ||| |||||||| | | |||||||| |||||||||||||||||| Sbjct 296 TTAAAAATTAAAAAAAGTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGC 355 Query 11499 ACGACGCTCTRACCAACTGAGCTAA 11523 |||||||||| |||| ||||||||| Sbjct 356 ACGACGCTCTAACCAGCTGAGCTAA 380 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260805934853824