Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_006548.1 Length=38439 Score E Sequences producing significant alignments: (Bits) Value seq23360 405 1e-108 seq23771 302 1e-77 seq132448 246 7e-61 seq55122 100 7e-17 >seq23360 Length=738 Score = 405 bits (448), Expect = 1e-108 Identities = 492/655 (75%), Gaps = 33/655 (5%) Strand=Plus/Plus Query 5106 AGAAAGCCGTCATGTCGGGCGACGTGATACATCGCCTCGCGGACGTAGCGAATGTCGGGG 5165 || || |||||||| || || || |||||||| | ||| ||||||||||| || |||||| Sbjct 3 AGGAAACCGTCATGGCGAGCCACCTGATACATGGACTCACGGACGTAGCGGATATCGGGG 62 Query 5166 CTGACGTACATGTCGTCAGCGCTCTGCAGCTCTTCGAAGGGGTCACGACGGATGTCGAAA 5225 || || |||||||| || ||| ||||||||| |||| || || || | | |||| Sbjct 63 CTTACATACATGTCTTCGGCGTCCTGCAGCTCATCGAGCGGATCGCGGAAAAGGCCGAAT 122 Query 5226 GCCTTCTTCGTCGCTGGTAGCAGTACCTGTTTGTTCATTACCATGGGGTCGCACTCCT-- 5283 || || |||||| ||| ||||||||| ||||| |||||| |||||||||| Sbjct 123 TGTTTTCGGGTGGCTGGTGTCAGCACCTGTTTGGCCATTAGCATGGGCTCGCACTCCTGT 182 Query 5284 -CGTTTTCTTGAACGTTTTCGGG---GGTTGCAGGAGCCTCGGCGTTGGCGCGCCGGGGC 5339 ||||| |||| |||||||||| || |||||| |||||||||||||||||||||||| Sbjct 183 TCGTTTACTTGGTCGTTTTCGGGTGGGGATGCAGGGGCCTCGGCGTTGGCGCGCCGGGGC 242 Query 5340 TCCACTTCTTCAAATGCCTG--GCGCACGTCATCAAACTG----CGCGCCATGGCCCATC 5393 ||| ||||||||| || || ||| | | || | || ||||| || || Sbjct 243 TCCGTTTCTTCAAAGGC-TGCAGCGATGGCCGCCACATTGACGCCGCGCTGTG---CA-- 296 Query 5394 AGGTATTCGGTG--ATCCGCCAAGCCAACT-GTTGCTGATTCAGCGATTTCGGCCAGAGG 5450 ||| | || | || |||| || | ||||| ||| ||| ||||| ||||| || Sbjct 297 AGGAA--CGTTTGAATTCGCCCCTGCAGCGCGTTGC-GATCCAGTGATTTGGGCCACTGG 353 Query 5451 CCGTGATTGATCAGTTGAGCGATCGCCGCCGGGCTCAGGTCGACCGCTCGAGCCAGGTCG 5510 |||||||||||| |||||||| || ||| ||||||| ||||||||||| ||||| ||| Sbjct 354 TTGTGATTGATCAGCTGAGCGATAGCGGCCTGGCTCAGATCGACCGCTCGGGCCAGCTCG 413 Query 5511 GCCTG--GGTCTTGCTGACCCCGGCAAGCACTTCCTTGAGTTTCAGCATCAG---TTGCC 5565 ||||| || | | ||| | |||| ||||| |||||||| |||| |||||| || || Sbjct 414 GCCTGTGGGACCT--TGATCTCGGCGAGCACGTCCTTGAGCTTCAACATCAGGCATTACC 471 Query 5566 TCCTACTACGCGCAGGCCAGGCCGGGCCGGCTTGCGCAACTGGTTGGCGATGGCGTCGAG 5625 |||||||||||||||||| |||||||| ||| |||| || | | |||||||||||| Sbjct 472 TCCTACTACGCGCAGGCCTGGCCGGGCTGGCGCACGCAGTTGCTGAGTGATGGCGTCGAG 531 Query 5626 CTGGTCTTCCGGCACGCCTTCGGGGTGGGTCTTCTTGAGCCAGGCCATCGAGTCCGTGGT 5685 ||| |||||||||||||| | ||||| | | ||||||||||||||| ||||| | ||| Sbjct 532 CTGATCTTCCGGCACGCCGTTGGGGTAGCTGGACTTGAGCCAGGCCATGGAGTCGGCGGT 591 Query 5686 CCAGGCTTCACCCAA-CTGCGCGCGTAGACGTTTGGCCGCCTCGACATGCGGAAG 5739 ||| || | ||||| ||| || || || | || ||||||||||| || | ||| Sbjct 592 CCA-ACTGCTCCCAAGCTGGGCACGCAGCAGCTTTGCCGCCTCGACGTGTGAAAG 645 >seq23771 Length=731 Score = 302 bits (334), Expect = 1e-77 Identities = 314/409 (77%), Gaps = 2/409 (0%) Strand=Plus/Plus Query 2185 TTCTGCGTGCTCAGGA-AGTCCTTGCGCGCCTTCTGCAGCTGTCGCTCCAGCACCTGGTA 2243 ||||| || | || || ||||| || || ||||||||||| |||||||| |||||||| Sbjct 2 TTCTGTGT-CGCAAGATAGTCCCGTCGAGCTTTCTGCAGCTGGCGCTCCAGAACCTGGTA 60 Query 2244 GGCGTAGCCGGTCAGCTCCGGCGCCGCCGCGCAGCCGACGAACAGGAACGAAGCGCTTTC 2303 ||||||||| | ||| || || ||||| | || || | ||| | ||| || ||| || Sbjct 61 GGCGTAGCCCGCCAGTTCTGGTGCCGCTCCACAACCAATGAAGATGAAAGATGCGTGCTC 120 Query 2304 GAAATAGGAGGTGCAGATGATCAGGTGCGTGCCGAAGGCATGGCAGCACACTTGAGCGAG 2363 ||| ||| | | |||||| | ||| || ||||| || | ||| || || || || Sbjct 121 GAACCAGGGAGCACTGATGATGAAGTGGGTCCCGAATGCTTCTGCGCAGACGTGTGCCAG 180 Query 2364 GCGCACCCGCCAGGCCGGCGGTTTTCCATCCGAGCCGGCTGGAACCCTGGCTTCGCCAGC 2423 |||||||||||| || || || | | |||||||| |||| || |||| || || || Sbjct 181 GCGCACCCGCCAAGCGGGTGGCTCACTCTCCGAGCCTGCTGCGACTTTGGCCTCTCCGGC 240 Query 2424 CATGCTGGCCAGCACGTCGCCCATCTCCAGGTTGTAGGCTTCCATCAGTTTGTGGGCATG 2483 ||||||||| || ||||| ||||| ||||||||||| || |||| || |||||||| || Sbjct 241 CATGCTGGCAAGGACGTCCCCCATTTCCAGGTTGTATGCGTCCAAGAGCTTGTGGGCCTG 300 Query 2484 ACGCAGCGCGATCTCGGCCTCGTTCGGGTTGGAACCCCGCCCCTTGGCCATTTCCAGGCA 2543 ||||| ||||| || |||||||| |||||||| || ||||||||||| |||||||| Sbjct 301 ACGCAAGGCGATTTCCGCCTCGTTTGGGTTGGACTCCTTACCCTTGGCCATCTCCAGGCA 360 Query 2544 CTTCTTGATCTTGTCGAGGATACGGTCCTGGTCCATGTCACACCCCCGC 2592 ||||||||||| |||| |||||||||||||||| | |||||||||| Sbjct 361 TTTCTTGATCTTTTCGAAAATACGGTCCTGGTCCACGCTACACCCCCGC 409 >seq132448 Length=1889 Score = 246 bits (272), Expect = 7e-61 Identities = 298/400 (75%), Gaps = 7/400 (2%) Strand=Plus/Minus Query 13067 CAGCACACCAACGAACGCGCCCAGGCCCTTCAGGACGCCCTGGTCCAG-TACAAGCAGCA 13125 |||||| || | ||||||| || | ||||| ||||| ||| | || || ||| Sbjct 1105 CAGCACGCCGAGCAACGCGCTGCTGCGGCTAAGGACAGCCTGGAGCAGCTGCAGGC-GCA 1047 Query 13126 GGTCGCGCGCGCCAACCAGGCCGAGGAGCAACTGCTGCAGGTACAGCAGCAACTGACCGA 13185 | | | ||||| ||||||| || || | |||| |||| ||||||| || ||||| Sbjct 1046 GACCTCCCGCGCAAACCAGGTTGACCAGGAGCTGCAGCAGACCAAGCAGCAGCTCACCGA 987 Query 13186 CACCCGACACCAACTCCAGGAGCGAATCGCCCATGTATCGACCGCCTACCGAGCGGCACC 13245 | || ||| | ||||||||||||||| || |||| |||||| ||||| |||| || Sbjct 986 CGTCCAACAAAAGCTCCAGGAGCGAATCCCCAATGTCACGACCGTCTACCTGCCGGCGCC 927 Query 13246 TGGTGCTGCGCCTACTGCTATCCCTCGCTGTGTCTTCACTCGCGGCTGGGTGCGCGACTT 13305 || ||| |||||||| |||||||||||||||| ||||| ||||||||||||||||| Sbjct 926 TGCTGCCACGCCTACTCCTATCCCTCGCTGTGTGCTCACTGCTGGCTGGGTGCGCGACTT 867 Query 13306 CAACACCGCCCTCGGCG---CCGGTTTGCCCGCC-GCAGGAGCGCGCGCCGATTCCGCCG 13361 |||| |||||||| | || | ||| ||| ||| ||| ||||| | |||||| Sbjct 866 CAACCTGGCCCTCGGAGCTTCCCCTGTGCGAGCCAGCA-CCGCGGGCGCCAACACCGCCG 808 Query 13362 GCGCTCAAACAGCGACCTGGCCCGCCGCCGGTTCTGACGCCGAGCTATTGGAAAGCGGCG 13421 | || | ||| |||||||| || ||||| |||| | || |||||||||||||| | Sbjct 807 TCCCTGATGGAGCCGCCTGGCCCACCCCCGGTACTGAAGAAGAACTATTGGAAAGCGGGG 748 Query 13422 TCACTCCGGCGGACATCCTGGCCTTTGCCCAGGACTACGG 13461 |||| || || |||||||| |||||||||||||||||||| Sbjct 747 TCACCCCCGCAGACATCCTTGCCTTTGCCCAGGACTACGG 708 >seq55122 Length=457 Score = 100 bits (110), Expect = 7e-17 Identities = 207/308 (67%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 6409 CGACTCGAACTTGCGCTCGATGATGTTCCGGGCGTTTTCGACCGAGCCCGTAACCCGCGC 6468 ||||||||||| |||||| | ||||| | || | ||| ||| ||| | | || || Sbjct 317 CGACTCGAACTCGCGCTCAACAATGTTGTGCGCCTGTTCAACCTGGCCTTTGGCGCGAGC 258 Query 6469 CGCGCCTGGCGCGTGCACGATGACCTCGATGCCCAGGGAGCAGCAGAGGTTCTTCGACAT 6528 || | || | ||| | |||||||| ||| | ||| | ||| | || Sbjct 257 GTTACCCACCTTGTTGATGATCAGCTCGATGCTCAGCGCCTTGCACAAGTTGCGGAAGAT 198 Query 6529 CGCCGAGATGTTGGCCGAACCAGGGTCCATCATCAGGATGCGTGGCACGCCGTGGAGCAT 6588 |||||| | |||||| |||||||||| |||| | |||| ||||| || |||| Sbjct 197 CGCCGAAGTCATGGCCGCACCAGGGTCCGTCATGATGATGAACGGCACACCATGGAAGGG 138 Query 6589 GTCGGCTCCACCACGCTCTTGCATGGCCTCGATCAGCACCGTGCAGAAGTTCTCGCCACT 6648 ||| | | ||||||| ||||||| ||||| ||| |||| | ||| || || Sbjct 137 ATCGTTTTCGCCACGCTTTTGCATGCAACTGATCAACACGTTGCACAGGTTTTCCGCAGA 78 Query 6649 CTCGGCGCCCATCACATAGCGAACGTAGATCCAGCCGGTGTAGTGATCGGTGATCTCGTA 6708 |||||||||| ||| || | || ||||| |||| || |||||||||||| |||| Sbjct 77 TTCGGCGCCCAGCACGTACTGCACATAGATGGTGCCGCTGGTGTGATCGGTGATGACGTA 18 Query 6709 GGACCACA 6716 | ||||| Sbjct 17 GCGCCACA 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122569428808288