Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06]
215,024 sequences; 206,414,839 total letters
Query= NC_006548.1
Length=38439
Score E
Sequences producing significant alignments: (Bits) Value
seq23360 405 1e-108
seq23771 302 1e-77
seq132448 246 7e-61
seq55122 100 7e-17
>seq23360
Length=738
Score = 405 bits (448), Expect = 1e-108
Identities = 492/655 (75%), Gaps = 33/655 (5%)
Strand=Plus/Plus
Query 5106 AGAAAGCCGTCATGTCGGGCGACGTGATACATCGCCTCGCGGACGTAGCGAATGTCGGGG 5165
|| || |||||||| || || || |||||||| | ||| ||||||||||| || ||||||
Sbjct 3 AGGAAACCGTCATGGCGAGCCACCTGATACATGGACTCACGGACGTAGCGGATATCGGGG 62
Query 5166 CTGACGTACATGTCGTCAGCGCTCTGCAGCTCTTCGAAGGGGTCACGACGGATGTCGAAA 5225
|| || |||||||| || ||| ||||||||| |||| || || || | | ||||
Sbjct 63 CTTACATACATGTCTTCGGCGTCCTGCAGCTCATCGAGCGGATCGCGGAAAAGGCCGAAT 122
Query 5226 GCCTTCTTCGTCGCTGGTAGCAGTACCTGTTTGTTCATTACCATGGGGTCGCACTCCT-- 5283
|| || |||||| ||| ||||||||| ||||| |||||| ||||||||||
Sbjct 123 TGTTTTCGGGTGGCTGGTGTCAGCACCTGTTTGGCCATTAGCATGGGCTCGCACTCCTGT 182
Query 5284 -CGTTTTCTTGAACGTTTTCGGG---GGTTGCAGGAGCCTCGGCGTTGGCGCGCCGGGGC 5339
||||| |||| |||||||||| || |||||| ||||||||||||||||||||||||
Sbjct 183 TCGTTTACTTGGTCGTTTTCGGGTGGGGATGCAGGGGCCTCGGCGTTGGCGCGCCGGGGC 242
Query 5340 TCCACTTCTTCAAATGCCTG--GCGCACGTCATCAAACTG----CGCGCCATGGCCCATC 5393
||| ||||||||| || || ||| | | || | || ||||| || ||
Sbjct 243 TCCGTTTCTTCAAAGGC-TGCAGCGATGGCCGCCACATTGACGCCGCGCTGTG---CA-- 296
Query 5394 AGGTATTCGGTG--ATCCGCCAAGCCAACT-GTTGCTGATTCAGCGATTTCGGCCAGAGG 5450
||| | || | || |||| || | ||||| ||| ||| ||||| ||||| ||
Sbjct 297 AGGAA--CGTTTGAATTCGCCCCTGCAGCGCGTTGC-GATCCAGTGATTTGGGCCACTGG 353
Query 5451 CCGTGATTGATCAGTTGAGCGATCGCCGCCGGGCTCAGGTCGACCGCTCGAGCCAGGTCG 5510
|||||||||||| |||||||| || ||| ||||||| ||||||||||| ||||| |||
Sbjct 354 TTGTGATTGATCAGCTGAGCGATAGCGGCCTGGCTCAGATCGACCGCTCGGGCCAGCTCG 413
Query 5511 GCCTG--GGTCTTGCTGACCCCGGCAAGCACTTCCTTGAGTTTCAGCATCAG---TTGCC 5565
||||| || | | ||| | |||| ||||| |||||||| |||| |||||| || ||
Sbjct 414 GCCTGTGGGACCT--TGATCTCGGCGAGCACGTCCTTGAGCTTCAACATCAGGCATTACC 471
Query 5566 TCCTACTACGCGCAGGCCAGGCCGGGCCGGCTTGCGCAACTGGTTGGCGATGGCGTCGAG 5625
|||||||||||||||||| |||||||| ||| |||| || | | ||||||||||||
Sbjct 472 TCCTACTACGCGCAGGCCTGGCCGGGCTGGCGCACGCAGTTGCTGAGTGATGGCGTCGAG 531
Query 5626 CTGGTCTTCCGGCACGCCTTCGGGGTGGGTCTTCTTGAGCCAGGCCATCGAGTCCGTGGT 5685
||| |||||||||||||| | ||||| | | ||||||||||||||| ||||| | |||
Sbjct 532 CTGATCTTCCGGCACGCCGTTGGGGTAGCTGGACTTGAGCCAGGCCATGGAGTCGGCGGT 591
Query 5686 CCAGGCTTCACCCAA-CTGCGCGCGTAGACGTTTGGCCGCCTCGACATGCGGAAG 5739
||| || | ||||| ||| || || || | || ||||||||||| || | |||
Sbjct 592 CCA-ACTGCTCCCAAGCTGGGCACGCAGCAGCTTTGCCGCCTCGACGTGTGAAAG 645
>seq23771
Length=731
Score = 302 bits (334), Expect = 1e-77
Identities = 314/409 (77%), Gaps = 2/409 (0%)
Strand=Plus/Plus
Query 2185 TTCTGCGTGCTCAGGA-AGTCCTTGCGCGCCTTCTGCAGCTGTCGCTCCAGCACCTGGTA 2243
||||| || | || || ||||| || || ||||||||||| |||||||| ||||||||
Sbjct 2 TTCTGTGT-CGCAAGATAGTCCCGTCGAGCTTTCTGCAGCTGGCGCTCCAGAACCTGGTA 60
Query 2244 GGCGTAGCCGGTCAGCTCCGGCGCCGCCGCGCAGCCGACGAACAGGAACGAAGCGCTTTC 2303
||||||||| | ||| || || ||||| | || || | ||| | ||| || ||| ||
Sbjct 61 GGCGTAGCCCGCCAGTTCTGGTGCCGCTCCACAACCAATGAAGATGAAAGATGCGTGCTC 120
Query 2304 GAAATAGGAGGTGCAGATGATCAGGTGCGTGCCGAAGGCATGGCAGCACACTTGAGCGAG 2363
||| ||| | | |||||| | ||| || ||||| || | ||| || || || ||
Sbjct 121 GAACCAGGGAGCACTGATGATGAAGTGGGTCCCGAATGCTTCTGCGCAGACGTGTGCCAG 180
Query 2364 GCGCACCCGCCAGGCCGGCGGTTTTCCATCCGAGCCGGCTGGAACCCTGGCTTCGCCAGC 2423
|||||||||||| || || || | | |||||||| |||| || |||| || || ||
Sbjct 181 GCGCACCCGCCAAGCGGGTGGCTCACTCTCCGAGCCTGCTGCGACTTTGGCCTCTCCGGC 240
Query 2424 CATGCTGGCCAGCACGTCGCCCATCTCCAGGTTGTAGGCTTCCATCAGTTTGTGGGCATG 2483
||||||||| || ||||| ||||| ||||||||||| || |||| || |||||||| ||
Sbjct 241 CATGCTGGCAAGGACGTCCCCCATTTCCAGGTTGTATGCGTCCAAGAGCTTGTGGGCCTG 300
Query 2484 ACGCAGCGCGATCTCGGCCTCGTTCGGGTTGGAACCCCGCCCCTTGGCCATTTCCAGGCA 2543
||||| ||||| || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct 301 ACGCAAGGCGATTTCCGCCTCGTTTGGGTTGGACTCCTTACCCTTGGCCATCTCCAGGCA 360
Query 2544 CTTCTTGATCTTGTCGAGGATACGGTCCTGGTCCATGTCACACCCCCGC 2592
||||||||||| |||| |||||||||||||||| | ||||||||||
Sbjct 361 TTTCTTGATCTTTTCGAAAATACGGTCCTGGTCCACGCTACACCCCCGC 409
>seq132448
Length=1889
Score = 246 bits (272), Expect = 7e-61
Identities = 298/400 (75%), Gaps = 7/400 (2%)
Strand=Plus/Minus
Query 13067 CAGCACACCAACGAACGCGCCCAGGCCCTTCAGGACGCCCTGGTCCAG-TACAAGCAGCA 13125
|||||| || | ||||||| || | ||||| ||||| ||| | || || |||
Sbjct 1105 CAGCACGCCGAGCAACGCGCTGCTGCGGCTAAGGACAGCCTGGAGCAGCTGCAGGC-GCA 1047
Query 13126 GGTCGCGCGCGCCAACCAGGCCGAGGAGCAACTGCTGCAGGTACAGCAGCAACTGACCGA 13185
| | | ||||| ||||||| || || | |||| |||| ||||||| || |||||
Sbjct 1046 GACCTCCCGCGCAAACCAGGTTGACCAGGAGCTGCAGCAGACCAAGCAGCAGCTCACCGA 987
Query 13186 CACCCGACACCAACTCCAGGAGCGAATCGCCCATGTATCGACCGCCTACCGAGCGGCACC 13245
| || ||| | ||||||||||||||| || |||| |||||| ||||| |||| ||
Sbjct 986 CGTCCAACAAAAGCTCCAGGAGCGAATCCCCAATGTCACGACCGTCTACCTGCCGGCGCC 927
Query 13246 TGGTGCTGCGCCTACTGCTATCCCTCGCTGTGTCTTCACTCGCGGCTGGGTGCGCGACTT 13305
|| ||| |||||||| |||||||||||||||| ||||| |||||||||||||||||
Sbjct 926 TGCTGCCACGCCTACTCCTATCCCTCGCTGTGTGCTCACTGCTGGCTGGGTGCGCGACTT 867
Query 13306 CAACACCGCCCTCGGCG---CCGGTTTGCCCGCC-GCAGGAGCGCGCGCCGATTCCGCCG 13361
|||| |||||||| | || | ||| ||| ||| ||| ||||| | ||||||
Sbjct 866 CAACCTGGCCCTCGGAGCTTCCCCTGTGCGAGCCAGCA-CCGCGGGCGCCAACACCGCCG 808
Query 13362 GCGCTCAAACAGCGACCTGGCCCGCCGCCGGTTCTGACGCCGAGCTATTGGAAAGCGGCG 13421
| || | ||| |||||||| || ||||| |||| | || |||||||||||||| |
Sbjct 807 TCCCTGATGGAGCCGCCTGGCCCACCCCCGGTACTGAAGAAGAACTATTGGAAAGCGGGG 748
Query 13422 TCACTCCGGCGGACATCCTGGCCTTTGCCCAGGACTACGG 13461
|||| || || |||||||| ||||||||||||||||||||
Sbjct 747 TCACCCCCGCAGACATCCTTGCCTTTGCCCAGGACTACGG 708
>seq55122
Length=457
Score = 100 bits (110), Expect = 7e-17
Identities = 207/308 (67%), Gaps = 0/308 (0%)
Strand=Plus/Minus
Query 6409 CGACTCGAACTTGCGCTCGATGATGTTCCGGGCGTTTTCGACCGAGCCCGTAACCCGCGC 6468
||||||||||| |||||| | ||||| | || | ||| ||| ||| | | || ||
Sbjct 317 CGACTCGAACTCGCGCTCAACAATGTTGTGCGCCTGTTCAACCTGGCCTTTGGCGCGAGC 258
Query 6469 CGCGCCTGGCGCGTGCACGATGACCTCGATGCCCAGGGAGCAGCAGAGGTTCTTCGACAT 6528
|| | || | ||| | |||||||| ||| | ||| | ||| | ||
Sbjct 257 GTTACCCACCTTGTTGATGATCAGCTCGATGCTCAGCGCCTTGCACAAGTTGCGGAAGAT 198
Query 6529 CGCCGAGATGTTGGCCGAACCAGGGTCCATCATCAGGATGCGTGGCACGCCGTGGAGCAT 6588
|||||| | |||||| |||||||||| |||| | |||| ||||| || ||||
Sbjct 197 CGCCGAAGTCATGGCCGCACCAGGGTCCGTCATGATGATGAACGGCACACCATGGAAGGG 138
Query 6589 GTCGGCTCCACCACGCTCTTGCATGGCCTCGATCAGCACCGTGCAGAAGTTCTCGCCACT 6648
||| | | ||||||| ||||||| ||||| ||| |||| | ||| || ||
Sbjct 137 ATCGTTTTCGCCACGCTTTTGCATGCAACTGATCAACACGTTGCACAGGTTTTCCGCAGA 78
Query 6649 CTCGGCGCCCATCACATAGCGAACGTAGATCCAGCCGGTGTAGTGATCGGTGATCTCGTA 6708
|||||||||| ||| || | || ||||| |||| || |||||||||||| ||||
Sbjct 77 TTCGGCGCCCAGCACGTACTGCACATAGATGGTGCCGCTGGTGTGATCGGTGATGACGTA 18
Query 6709 GGACCACA 6716
| |||||
Sbjct 17 GCGCCACA 10
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 122569428808288
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |