Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq9586 168 1e-37 seq34955 161 2e-35 seq6062 158 2e-34 seq179265 156 7e-34 seq184604 149 1e-31 seq20029 134 2e-27 seq180812 111 2e-20 seq109273 105 1e-18 seq130563 104 4e-18 >seq9586 Length=1123 Score = 168 bits (186), Expect = 1e-37 Identities = 182/241 (76%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| ||||||||||||||||| || || ||| ||||||| ||||| || ||| Sbjct 1062 GATAACATCCAGGGAATCACCAAGCCAGCCATTCGACGTTTGGCTCGCCGTGGCGGCGTC 1003 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| ||||||| | |||||||||||| | | ||| | |||||||| || || Sbjct 1002 AAGCGGATCTCTGGTCTAATCTATGAAGAGACCAGAGGTGTCCTCAAGATCTTTCTAGAG 943 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||| || || ||||| ||||||||| | ||||| |||||| || Sbjct 942 AACGTCATCCGTGACGCCGTCACTTATACTGAGCACGCTCGCAGGAAGACCGTCACCGCC 883 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| |||||||||| ||||| | || || | | | ||||| ||||| ||||| Sbjct 882 ATGGACGTCGTCTATGCTTTGAAGAGACAGGGAAGGACCCTCTATGGATTTGGGGGTTAA 823 Query 16700 T 16700 | Sbjct 822 T 822 >seq34955 Length=594 Score = 161 bits (178), Expect = 2e-35 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||||||||| ||||| || ||| |||||||| | || || ||| Sbjct 29 GATAACATCCAGGGCATCACCAAGCCTGCTATTCGCCGTTTGGCTCGTAGAGGCGGCGTC 88 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| ||||||| | |||||||||||| | | ||| | |||||||| ||| || Sbjct 89 AAGCGTATCTCTGGTCTAATCTATGAAGAGACCAGAGGTGTCCTCAAGATCTTTCTCGAG 148 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||| || || || |||||||||||| | ||||| |||||| || Sbjct 149 AACGTCATCCGTGACGCCGTCACTTACACCGAGCACGCTCGCAGGAAGACCGTCACCGCC 208 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | || ||||| ||||| | ||||| Sbjct 209 ATGGATGTTGTTTATGCTTTGAAGAGGCAAGG 240 >seq6062 Length=1350 Score = 158 bits (174), Expect = 2e-34 Identities = 183/247 (74%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || |||||||| || ||||| ||||| || || || ||| ||||||| ||||| Sbjct 108 TCTCCGGGACAACATCCAGGGCATCACTAAGCCCGCCATTCGCCGTTTGGCTCGCCGTGG 167 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || ||||||||| |||| || | |||||||||||| ||||| || | |||||||| Sbjct 168 CGGTGTCAAGCGTATCTCCGGTCTTATCTATGAAGAGACTCGTGGAGTCCTCAAGATCTT 227 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 |||| ||| ||| |||| ||| || || || || ||||||||| | ||||| || Sbjct 228 CCTCGAGAACGTCATCCGTGACGCCGTCACTTACACTGAGCACGCTCGCAGGAAGACCGT 287 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| ||||||| |||||||||| | || | || || | | | ||||| ||||| Sbjct 288 CACCGCCATGGACGTCGTCTATGCTCTCAAGAGGCAGGGAAGGACCCTCTATGGATTTGG 347 Query 16693 AAGTTAA 16699 ||||| Sbjct 348 GGGTTAA 354 >seq179265 Length=3806 Score = 156 bits (172), Expect = 7e-34 Identities = 178/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||||||||| ||||| || ||| ||||||| | || || ||| Sbjct 3358 GATAACATCCAGGGCATCACCAAGCCTGCTATTCGCCGTTTGGCTCGCAGAGGCGGCGTC 3417 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| |||| || | |||||||||||| | | ||| | |||||||||||| || Sbjct 3418 AAGCGTATCTCCGGTCTCATCTATGAAGAGACCAGAGGTGTCCTCAAGATCTTCCTCGAG 3477 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||| || || ||| ||||||||||| | |||||||||||| || Sbjct 3478 AACGTCATCCGTGACGCCGTCACCTACACCGAGCACGCCCGGAGGAAGACTGTCACCGCC 3537 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||||| |||| ||||| | || | || || | | | |||||||| ||| |||| Sbjct 3538 ATGGACGTCGTGTATGCTCTCAAGAGGCAGGGAAGGACCCTCTATGGTTTCGGAGGTTA 3596 >seq184604 Length=1118 Score = 149 bits (164), Expect = 1e-31 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||||||||| || || || ||||| ||||| ||||| || ||| Sbjct 877 GATAACATCCAGGGCATCACCAAGCCCGCCATTCGCCGTCTCGCTCGCCGTGGCGGCGTC 818 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| |||| || | |||| || |||| ||||| ||| | ||||| |||||| || Sbjct 817 AAGCGTATCTCCGGTCTCATCTACGAGGAGACTCGTGGTGTCCTCAAGATATTCCTCGAG 758 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||| || | || || |||||||| | ||||| |||||| || Sbjct 757 AACGTCATCCGTGACGCCGTTACTTACACTGAGCACGCCCGCAGGAAGACCGTCACCGCC 698 Query 16640 ATGGATATCGTCTATGC 16656 |||||| |||||||||| Sbjct 697 ATGGATGTCGTCTATGC 681 >seq20029 Length=799 Score = 134 bits (148), Expect = 2e-27 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||||||||| || || || ||| ||||||| | || || || Sbjct 544 GATAACATCCAGGGCATCACCAAGCCCGCCATTCGCCGTTTGGCTCGCAGAGGCGGCGTG 485 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| ||||||| | |||||||||||| | | || | |||||||||||| | Sbjct 484 AAGCGTATCTCTGGTCTCATCTATGAAGAGACCAGGGGCGTCCTCAAGATCTTCCTCGAA 425 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||| || || ||| || |||||||| | ||||| |||||| || Sbjct 424 AACGTCATCCGTGACGCCGTCACCTACACTGAGCACGCCCGGAGGAAGACAGTCACCGCC 365 Query 16640 ATGGATATCGTCTATGC 16656 ||||| |||||||||| Sbjct 364 ATGGACGTCGTCTATGC 348 >seq180812 Length=2153 Score = 111 bits (122), Expect = 2e-20 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || || || || || ||||| ||||| || || ||||| ||||||| | || Sbjct 1058 CTCCGTGACAATATTCAGGGGATCACTAAGCCGGCCATACGTCGGTTGGCTCGCAGAGGA 1117 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 |||||||||||| || ||| ||| | ||||| || | | | ||| | ||||| || Sbjct 1118 GGAGTCAAGCGTATCAGTGGCTTGATTTATGAGGAAACAAGAGGTGTGCTCAAGATTTTT 1177 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || ||| || || | ||| |||||||||||| || |||||||| Sbjct 1178 CTTGAGAATGTGATCAGAGACGCCGTGACCTACACCGAGCACGCTCGCCGCAAGACTGTG 1237 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| | || ||||| ||||| | |||||| | | | ||||| ||||| Sbjct 1238 ACTGCCATGGATGTGGTGTATGCGTTGAAGAGGCAAGGCAGGACTCTGTATGGGTTTGG 1296 >seq109273 Length=308 Score = 105 bits (116), Expect = 1e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| ||||| ||||| ||||| Sbjct 96 CTCCGCGACAACATCCAGGGCATCACGAAGCCGGCGATCCGCCGTCTCGCTCGCCGTGGC 155 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||| | || || | |||| || |||| || | || | ||||||||| Sbjct 156 GGAGTGAAGAGAATCAGCGGCCTCATCTACGAGGAGACACGAGGGGTCCTCAAGATCTTC 215 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| ||| || | || ||||||||||| | | ||||| || Sbjct 216 CTTGAGAACGTCATCCGTGACGCCGTGACGTACACCGAGCACGCCAGGAGGAAGACGGTG 275 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 || ||||||| ||||||| || Sbjct 276 ACGGCCATGGACGTCGTCTACGC 298 >seq130563 Length=571 Score = 104 bits (114), Expect = 4e-18 Identities = 169/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | | || || || || |||||||| || ||||| ||||| || || Sbjct 76 GCCAAGCGTCACAGGAAGGTC-CTCCGCGACAACATCCAGGGCATCACGAAGCCGGCCAT 134 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| ||||| ||||| ||||||||| | || || | |||| || |||| Sbjct 135 ACGCCGTCTCGCTCGCCGTGGCGGAGTCAAGAGGATCAGCGGCCTCATCTACGAGGAGAC 194 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | |||||||| || ||| ||||||| || || | || ||||| Sbjct 195 ACGTGGCGTCCTCAAGATCTTTCTGGAGAATGTTATCCGCGACGCCGTGACGTACACCGA 254 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | | ||||| || || ||||||| ||||||| || | || | ||||| Sbjct 255 GCACGCCAGGAGGAAGACGGTGACGGCCATGGACGTCGTCTACGCGCTCAAGAGGCAAGG 314 Query 16672 C 16672 | Sbjct 315 C 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78878602051632