Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq149362 95.1 1e-14 seq204338 93.3 4e-14 seq20564 87.8 2e-12 seq210190 86.0 5e-12 seq117806 86.0 5e-12 seq134381 82.4 7e-11 >seq149362 Length=6446 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || || || || ||| | ||||| | ||||| || | Sbjct 2199 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 2258 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | ||||| ||||||| |||||||||||||| || || || || Sbjct 2259 AGACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 2318 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACA-GAAAC-GTCAGCGATTAT 24167 ||||| || |||| | || ||||| || || || | || || || | || ||||| Sbjct 2319 GCAGAGGCTCATTTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCA--GATTAC 2376 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||| ||||| || || | ||||| ||| Sbjct 2377 AACATTCAGAAAGAGTCGACTCTGCATTTGGTG 2409 >seq204338 Length=3429 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/143 (75%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || || |||||||| ||||| |||||||||||| |||||| | ||| |||||| | ||| Sbjct 2926 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 2985 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| |||| | |||||| |||| ||||| || || || |||| |||| ||| Sbjct 2986 GATGGAAGAACTCTTGCAGATTATGACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTA 3045 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 || |||| || || ||||| || Sbjct 3046 AGGCTGAGGGGTGGAACTATGAT 3068 >seq20564 Length=789 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/143 (74%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || || |||||||| ||||| ||||| ||||||||||||| | || ||||| | ||| Sbjct 650 GATAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAA 591 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| ||| | | |||||||| || |||||||| || || | || | ||||| Sbjct 590 GATGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTGTTG 531 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 || ||||| ||||| ||||| || Sbjct 530 AGGTTGAGGGGAGGAACTATGAT 508 >seq210190 Length=6381 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || |||| || || | | ||| |||| || ||| | | Sbjct 2760 ATGCAGATCTTTGTGAAGACCCTAACCGGCAAGACCGTCACCCTCGAGGTGGAGAGCTCC 2819 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| ||||| || ||||| ||||| |||||| Sbjct 2820 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGATCAA 2879 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | ||| ||||| ||||| || | ||| | | || || || || Sbjct 2880 CAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGCAGGACCCTCGCTGACTACAAT 2939 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 2940 ATCCAGAAGGAGTCGAC 2956 >seq117806 Length=5035 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | || ||| |||| || ||| || | Sbjct 3465 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATCACCCTCGAGGTGGAGTCCTCC 3524 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| |||||||| || || || || Sbjct 3525 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCGGACCAG 3584 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| || | | | | || ||| || ||| Sbjct 3585 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTCGCCGACTACAAC 3644 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 3645 ATCCAGAAGGAGTCGAC 3661 >seq134381 Length=6558 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||| || |||| || || | || ||| |||| || ||| | | Sbjct 4334 ATGCAGATCTTTGTAAAGACCCTAACCGGCAAGACCATCACCCTCGAGGTAGAGAACTCC 4275 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || ||||| ||||| || ||| Sbjct 4274 GACACCATCGACAACATCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAA 4215 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||||| || || | | ||| ||||| ||||| || Sbjct 4214 CAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGA 4180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428809307568720