Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06]
215,024 sequences; 206,414,839 total letters
Query= NC_007805.1
Length=39199
Score E
Sequences producing significant alignments: (Bits) Value
seq29891 347 3e-91
seq25507 122 2e-23
seq120323 116 9e-22
seq18478 114 3e-21
>seq29891
Length=646
Score = 347 bits (384), Expect = 3e-91
Identities = 452/635 (71%), Gaps = 0/635 (0%)
Strand=Plus/Plus
Query 32874 GCACCCTGCAGGTCGCTGCCCACCTGGTGAAGAACACCCCAAGCGCCGCGAACGCTGATG 32933
|||| ||| || ||||| ||| | | | ||||| || ||||| || ||| | |
Sbjct 12 GCACGCTGGCAGTGGCTGCTCACATCGCTCACAACACGCCGAGCGCGGCAAACTTCGCAG 71
Query 32934 AGTACGCCCGGATCATCAAGCAGCGGTCGGTGGCGCGCCGGGTGATCGCCGCGGCCGAGG 32993
|||||||||||||| | || |||||||||||||| |||||||||||||| || || |
Sbjct 72 AGTACGCCCGGATCGTGAAACAGCGGTCGGTGGCCCGCCGGGTGATCGCTGCTGCACACA 131
Query 32994 TGATGAGCCAGCGTCTGCAGGATGGCGAACCGCTNNNNNNNNNNNNNNNNNNNNNNNNNN 33053
| ||| |||| || | |||||||| ||||
Sbjct 132 TCATGTCGGAGCGCTTGAAAGATGGCGACTCGCTGGACGAAGTACTGGCGCAGGGGCAAC 191
Query 33054 NNNCATGGGTTGCCCTCGAGGCCGAGGGGCTCGACTCCCGGCGCCGGTACCGCTTCATCG 33113
| ||| | ||||| || || || || || || ||||| |||||||||||| | |
Sbjct 192 AGGCCTGGATCGCCCTTGAAGCGGAAGGTCTGGATTCCCGCAAGCGGTACCGCTTCGTGG 251
Query 33114 GCGAGGTGCTGCCGGAGGCCATCGACGGCATCGACAGGCGCTTTAACCGTGAGGTGAAGC 33173
||||| | ||||| ||||| |||||||| || ||| | || || ||||| |||||| |
Sbjct 252 GCGAGATCCTGCCCGAGGCAATCGACGGGATTGACCGCCGGTTCAACCGCGAGGTGGTTC 311
Query 33174 TGGGGTACGACACCGGCCTACCCTCGTTGGACGCCTTCATCCCGGGCATCTGTCCCGGCC 33233
|||| | ||| ||||| || || ||| | ||| ||||| || |||||||| |||| |
Sbjct 312 TGGGCTTCGATACCGGGCTGCCATCGCTCGACAAGTTCATTCCTGGCATCTGCGCCGGGC 371
Query 33234 ACATGGTGGTTGTGGCCGGCGAGCCGGGCAGCGGCAAGACCACGCTTGGCCTTGGGTTCG 33293
||||||| || | || |||| ||||| |||||||||||||| || ||||| || |||
Sbjct 372 ACATGGTCGTCATCGCTGGCGCCCCGGGTAGCGGCAAGACCACCCTGGGCCTGGGTATCG 431
Query 33294 CCGAGCGGGTGGCGTTGGCGTGCAACGAGCCGGCGCTGGTGTTCAGCCTGGAGATGACCG 33353
| |||||||| ||| ||| | ||| || ||||||| |||||||| |||||||| |
Sbjct 432 CTGAGCGGGTAGCGCTGGTGGCCAAGTCCACGTCGCTGGTATTCAGCCTTGAGATGACGG 491
Query 33354 ATGTCGAACTGGCCAACCGCGTGCTGTCATCGGTGGGCAGCGTTCCGCTCAAGCACATTG 33413
|||| || ||| | ||||| | || | || ||||| ||||| | | | ||||||||
Sbjct 492 ATGTGGAGCTGACAAACCGGTCGTTGGCCTCAGTGGGTAGCGTGCAGTTGAAGCACATCA 551
Query 33414 CCGAAGGCCACTCGATGGCCGATTCAGACTGGCCGGGCCTGACTGGGGCGGTGAACAAGC 33473
||||||| || ||||||| ||| |||||||| |||||||| | ||| |||| |||||
Sbjct 552 CCGAAGGGCATTCGATGGGCGACAGCGACTGGCCAGGCCTGACGGCGGCTGTGAGCAAGC 611
Query 33474 TCAACCATGCCCCGCTGATCCTCTGCGACGACGCC 33508
|| | |||||||||||| |||| || ||||||
Sbjct 612 TCGATGGCGCCCCGCTGATCTTCTGTGATGACGCC 646
>seq25507
Length=704
Score = 122 bits (134), Expect = 2e-23
Identities = 234/335 (70%), Gaps = 14/335 (4%)
Strand=Plus/Minus
Query 36889 AGCCCGCCACTGAGCGGGCTTCGTCGTTTTAGAACCCCTGCGAGGGG-CAGAGACTATG- 36946
|||||||||||| |||||||| || ||| | |||| | |||||| | || ||||
Sbjct 329 AGCCCGCCACTGCGCGGGCTTTTTCATTTCTG--CCCCGGAGAGGGGATATCGAGTATGT 272
Query 36947 --AAAATGCCAGAACGCCCTGAAACTTGGGCTGCGCTGCTTGCGTGGCTGTCTGCGCACT 37004
|| |||||||| || || || ||||| | ||||||||| |||||| ||||
Sbjct 271 CCAACATGCCAGATAAACCAGACACCTGGGCGGTGCTGCTTGCTTGGCTGAGCTCGCATG 212
Query 37005 ATCCGCAGCTGTACGCCGCCGGCCTGTCCTTTGTGGTCGC-GCTGACCCGGGTGATCTAC 37063
|||| |||||| |||| || ||| || || ||| | || ||| | || | ||||||
Sbjct 211 CGCCGCTGCTGTATGCCGGCGCCCTCTCGTTCGTGATGGCTGCT-CTCAGGATCATCTAC 153
Query 37064 GGCGGAGGAACGCGGCGCCAGGCGCTGCTCGAGGCAACGCTCTGCACCCTGATCACCTTG 37123
|| || ||||| || |||||||| | || |||||| | || ||||| ||| | | ||
Sbjct 152 GGTGGCGGAACCCGTCGCCAGGCTGTACTGGAGGCATCTCTGTGCACACTGCTGA-CTGC 94
Query 37124 GGCCTGATTCCTG-TCCTTGAGTGGTTTGGCCTTCCGCAGAACATGGCTACTGCTGCCGG 37182
| | ||||| | | || |||| || ||| | ||||||||| | || | | ||| |
Sbjct 93 CGGCGCATTCCCGCTGCTGGAGTACTTCGGCTTGCCGCAGAACCTTGCCGCAG--GCCTG 36
Query 37183 GGTGTT--CACCGGTTTCCTGGGTGTGAAGAAGAT 37215
|| | | || || ||| | || |||||||||||
Sbjct 35 GGCGGTGGCATTGGCTTCATCGGCGTGAAGAAGAT 1
>seq120323
Length=849
Score = 116 bits (128), Expect = 9e-22
Identities = 266/396 (67%), Gaps = 12/396 (3%)
Strand=Plus/Plus
Query 30091 GAGGAACAGAACGCCGTCCTGCAACTGGAGAATCAGCACCAGGCCGAGACCATCTCCAGC 30150
||||||||||||| || ||| |||||||| ||||| |||||| ||| ||| |||
Sbjct 2 GAGGAACAGAACGAGGTGCTGGTGCTGGAGAACCAGCAGCAGGCCAAGAAAATCGAGAGC 61
Query 30151 CTTGAATCGCTGTTCATGGCAGGCGAGACGCCTACTCAGTTCTGCAAGCGCCTGAACGGG 30210
|| ||| | |||||| | |||||||| ||| | |||||| ||||||| ||||||||
Sbjct 62 CTGGAACATTTCTTCATGCCTGGCGAGACCCCTGCGCAGTTCGCCAAGCGCTTGAACGGG 121
Query 30211 GTGAACTGCGCCAAGGTAAACAGCACCCTGTGCCAACTCGGCTGGCTCTTCAA---TGAG 30267
||||||| | | | | | | ||| | ||||| ||| ||| || ||||
Sbjct 122 GTGAACTCCTTACTGATCACCGCCTACCTCCTGGACCTCGGTTGGATCTGGAACTCTGAG 181
Query 30268 CAGCGCGAAGAGGAGGGCGCACCGCGGTATCGCGTCGCCAGCCGTGTCCGCGACAAGTA- 30326
| || ||| || | |||| ||| || | || | | |||||| ||| |
Sbjct 182 CGACGGGAAAAGAA---AAAACCGAAGTACCGGACCACCTACAAAGCCCGCGAGAAGGAT 238
Query 30327 --CCTCACCGAGCGCCCGCGCAAAATCGCCCCCGAGG--GCGGTGACTCC-TTCATCAAG 30381
||||||||||| || || ||||||| ||||| | | |||| |||| |
Sbjct 239 CTGCTCACCGAGCGGCCACGGAAAATCGATGGCGAGGATCTCGAGTCTCCAATCATTCGG 298
Query 30382 TACGACCTGCAGTTGCTGCTGGCCGGCGCCCAGCGCCTGCACCAACTCTACATGCAGCAA 30441
||||| || |||||||| || ||| | || ||||||| | || |||||| |
Sbjct 299 TACGAGCTCCAGTTGCTTGAGGAGGGCTCTAAGGCCCTGCACGACCTGTACATGGCCGAG 358
Query 30442 AAGCTGGTCATGAAAGCCACCTGGGACGGCCGGTTC 30477
|||||| |||||| ||||||||||||| ||||
Sbjct 359 AAGCTGCCCATGAAGAAGACCTGGGACGGCCAGTTC 394
>seq18478
Length=831
Score = 114 bits (126), Expect = 3e-21
Identities = 148/204 (73%), Gaps = 3/204 (1%)
Strand=Plus/Plus
Query 25601 GCACGGCGGGTGACGCCGAGTTTGGTGGTCGCTGCCAGAACGCGCTTACCCACCGTGCCC 25660
|| |||||||| ||||| || || |||||||| ||| |||||||| | | | |
Sbjct 186 GCCCGGCGGGTAACGCCCAGCTTCGTGGTCGCGCTCAGCACGCGCTTCTTGATGGAGTCG 245
Query 25661 GGCTGCATGCCCAGGTCGCGGGCCAACTCCTTCGAGGTACGACCCGCAGCGATGCCCAGG 25720
||||||| || || || ||||||| ||||| ||||| | || ||| || |||| |
Sbjct 246 GGCTGCACACCAAGCTCACGGGCCAGTTCCTTAGAGGTCTGGCCGCAAGCAATCCCCAAG 305
Query 25721 ACGCACTGAAGCTCACGCAGGGACAGGCCCTTGCCGAGGAAGCCGGTGAAGCCGTGTGCG 25780
|||||||||| ||||||| ||||| | |||||||||||||| |||| | | |
Sbjct 306 ACGCACTGAACTTCACGCAAAGACAGCTCACGACCGAGGAAGCCGGTCCAGCCATTGGTG 365
Query 25781 GTGAT---GGTGGCGGCGGTCATG 25801
||||| ||| || |||||||||
Sbjct 366 GTGATCGAGGTTGCTGCGGTCATG 389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 124995218915168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |