Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_007805.1 Length=39199 Score E Sequences producing significant alignments: (Bits) Value seq29891 347 3e-91 seq25507 122 2e-23 seq120323 116 9e-22 seq18478 114 3e-21 >seq29891 Length=646 Score = 347 bits (384), Expect = 3e-91 Identities = 452/635 (71%), Gaps = 0/635 (0%) Strand=Plus/Plus Query 32874 GCACCCTGCAGGTCGCTGCCCACCTGGTGAAGAACACCCCAAGCGCCGCGAACGCTGATG 32933 |||| ||| || ||||| ||| | | | ||||| || ||||| || ||| | | Sbjct 12 GCACGCTGGCAGTGGCTGCTCACATCGCTCACAACACGCCGAGCGCGGCAAACTTCGCAG 71 Query 32934 AGTACGCCCGGATCATCAAGCAGCGGTCGGTGGCGCGCCGGGTGATCGCCGCGGCCGAGG 32993 |||||||||||||| | || |||||||||||||| |||||||||||||| || || | Sbjct 72 AGTACGCCCGGATCGTGAAACAGCGGTCGGTGGCCCGCCGGGTGATCGCTGCTGCACACA 131 Query 32994 TGATGAGCCAGCGTCTGCAGGATGGCGAACCGCTNNNNNNNNNNNNNNNNNNNNNNNNNN 33053 | ||| |||| || | |||||||| |||| Sbjct 132 TCATGTCGGAGCGCTTGAAAGATGGCGACTCGCTGGACGAAGTACTGGCGCAGGGGCAAC 191 Query 33054 NNNCATGGGTTGCCCTCGAGGCCGAGGGGCTCGACTCCCGGCGCCGGTACCGCTTCATCG 33113 | ||| | ||||| || || || || || || ||||| |||||||||||| | | Sbjct 192 AGGCCTGGATCGCCCTTGAAGCGGAAGGTCTGGATTCCCGCAAGCGGTACCGCTTCGTGG 251 Query 33114 GCGAGGTGCTGCCGGAGGCCATCGACGGCATCGACAGGCGCTTTAACCGTGAGGTGAAGC 33173 ||||| | ||||| ||||| |||||||| || ||| | || || ||||| |||||| | Sbjct 252 GCGAGATCCTGCCCGAGGCAATCGACGGGATTGACCGCCGGTTCAACCGCGAGGTGGTTC 311 Query 33174 TGGGGTACGACACCGGCCTACCCTCGTTGGACGCCTTCATCCCGGGCATCTGTCCCGGCC 33233 |||| | ||| ||||| || || ||| | ||| ||||| || |||||||| |||| | Sbjct 312 TGGGCTTCGATACCGGGCTGCCATCGCTCGACAAGTTCATTCCTGGCATCTGCGCCGGGC 371 Query 33234 ACATGGTGGTTGTGGCCGGCGAGCCGGGCAGCGGCAAGACCACGCTTGGCCTTGGGTTCG 33293 ||||||| || | || |||| ||||| |||||||||||||| || ||||| || ||| Sbjct 372 ACATGGTCGTCATCGCTGGCGCCCCGGGTAGCGGCAAGACCACCCTGGGCCTGGGTATCG 431 Query 33294 CCGAGCGGGTGGCGTTGGCGTGCAACGAGCCGGCGCTGGTGTTCAGCCTGGAGATGACCG 33353 | |||||||| ||| ||| | ||| || ||||||| |||||||| |||||||| | Sbjct 432 CTGAGCGGGTAGCGCTGGTGGCCAAGTCCACGTCGCTGGTATTCAGCCTTGAGATGACGG 491 Query 33354 ATGTCGAACTGGCCAACCGCGTGCTGTCATCGGTGGGCAGCGTTCCGCTCAAGCACATTG 33413 |||| || ||| | ||||| | || | || ||||| ||||| | | | |||||||| Sbjct 492 ATGTGGAGCTGACAAACCGGTCGTTGGCCTCAGTGGGTAGCGTGCAGTTGAAGCACATCA 551 Query 33414 CCGAAGGCCACTCGATGGCCGATTCAGACTGGCCGGGCCTGACTGGGGCGGTGAACAAGC 33473 ||||||| || ||||||| ||| |||||||| |||||||| | ||| |||| ||||| Sbjct 552 CCGAAGGGCATTCGATGGGCGACAGCGACTGGCCAGGCCTGACGGCGGCTGTGAGCAAGC 611 Query 33474 TCAACCATGCCCCGCTGATCCTCTGCGACGACGCC 33508 || | |||||||||||| |||| || |||||| Sbjct 612 TCGATGGCGCCCCGCTGATCTTCTGTGATGACGCC 646 >seq25507 Length=704 Score = 122 bits (134), Expect = 2e-23 Identities = 234/335 (70%), Gaps = 14/335 (4%) Strand=Plus/Minus Query 36889 AGCCCGCCACTGAGCGGGCTTCGTCGTTTTAGAACCCCTGCGAGGGG-CAGAGACTATG- 36946 |||||||||||| |||||||| || ||| | |||| | |||||| | || |||| Sbjct 329 AGCCCGCCACTGCGCGGGCTTTTTCATTTCTG--CCCCGGAGAGGGGATATCGAGTATGT 272 Query 36947 --AAAATGCCAGAACGCCCTGAAACTTGGGCTGCGCTGCTTGCGTGGCTGTCTGCGCACT 37004 || |||||||| || || || ||||| | ||||||||| |||||| |||| Sbjct 271 CCAACATGCCAGATAAACCAGACACCTGGGCGGTGCTGCTTGCTTGGCTGAGCTCGCATG 212 Query 37005 ATCCGCAGCTGTACGCCGCCGGCCTGTCCTTTGTGGTCGC-GCTGACCCGGGTGATCTAC 37063 |||| |||||| |||| || ||| || || ||| | || ||| | || | |||||| Sbjct 211 CGCCGCTGCTGTATGCCGGCGCCCTCTCGTTCGTGATGGCTGCT-CTCAGGATCATCTAC 153 Query 37064 GGCGGAGGAACGCGGCGCCAGGCGCTGCTCGAGGCAACGCTCTGCACCCTGATCACCTTG 37123 || || ||||| || |||||||| | || |||||| | || ||||| ||| | | || Sbjct 152 GGTGGCGGAACCCGTCGCCAGGCTGTACTGGAGGCATCTCTGTGCACACTGCTGA-CTGC 94 Query 37124 GGCCTGATTCCTG-TCCTTGAGTGGTTTGGCCTTCCGCAGAACATGGCTACTGCTGCCGG 37182 | | ||||| | | || |||| || ||| | ||||||||| | || | | ||| | Sbjct 93 CGGCGCATTCCCGCTGCTGGAGTACTTCGGCTTGCCGCAGAACCTTGCCGCAG--GCCTG 36 Query 37183 GGTGTT--CACCGGTTTCCTGGGTGTGAAGAAGAT 37215 || | | || || ||| | || ||||||||||| Sbjct 35 GGCGGTGGCATTGGCTTCATCGGCGTGAAGAAGAT 1 >seq120323 Length=849 Score = 116 bits (128), Expect = 9e-22 Identities = 266/396 (67%), Gaps = 12/396 (3%) Strand=Plus/Plus Query 30091 GAGGAACAGAACGCCGTCCTGCAACTGGAGAATCAGCACCAGGCCGAGACCATCTCCAGC 30150 ||||||||||||| || ||| |||||||| ||||| |||||| ||| ||| ||| Sbjct 2 GAGGAACAGAACGAGGTGCTGGTGCTGGAGAACCAGCAGCAGGCCAAGAAAATCGAGAGC 61 Query 30151 CTTGAATCGCTGTTCATGGCAGGCGAGACGCCTACTCAGTTCTGCAAGCGCCTGAACGGG 30210 || ||| | |||||| | |||||||| ||| | |||||| ||||||| |||||||| Sbjct 62 CTGGAACATTTCTTCATGCCTGGCGAGACCCCTGCGCAGTTCGCCAAGCGCTTGAACGGG 121 Query 30211 GTGAACTGCGCCAAGGTAAACAGCACCCTGTGCCAACTCGGCTGGCTCTTCAA---TGAG 30267 ||||||| | | | | | | ||| | ||||| ||| ||| || |||| Sbjct 122 GTGAACTCCTTACTGATCACCGCCTACCTCCTGGACCTCGGTTGGATCTGGAACTCTGAG 181 Query 30268 CAGCGCGAAGAGGAGGGCGCACCGCGGTATCGCGTCGCCAGCCGTGTCCGCGACAAGTA- 30326 | || ||| || | |||| ||| || | || | | |||||| ||| | Sbjct 182 CGACGGGAAAAGAA---AAAACCGAAGTACCGGACCACCTACAAAGCCCGCGAGAAGGAT 238 Query 30327 --CCTCACCGAGCGCCCGCGCAAAATCGCCCCCGAGG--GCGGTGACTCC-TTCATCAAG 30381 ||||||||||| || || ||||||| ||||| | | |||| |||| | Sbjct 239 CTGCTCACCGAGCGGCCACGGAAAATCGATGGCGAGGATCTCGAGTCTCCAATCATTCGG 298 Query 30382 TACGACCTGCAGTTGCTGCTGGCCGGCGCCCAGCGCCTGCACCAACTCTACATGCAGCAA 30441 ||||| || |||||||| || ||| | || ||||||| | || |||||| | Sbjct 299 TACGAGCTCCAGTTGCTTGAGGAGGGCTCTAAGGCCCTGCACGACCTGTACATGGCCGAG 358 Query 30442 AAGCTGGTCATGAAAGCCACCTGGGACGGCCGGTTC 30477 |||||| |||||| ||||||||||||| |||| Sbjct 359 AAGCTGCCCATGAAGAAGACCTGGGACGGCCAGTTC 394 >seq18478 Length=831 Score = 114 bits (126), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 25601 GCACGGCGGGTGACGCCGAGTTTGGTGGTCGCTGCCAGAACGCGCTTACCCACCGTGCCC 25660 || |||||||| ||||| || || |||||||| ||| |||||||| | | | | Sbjct 186 GCCCGGCGGGTAACGCCCAGCTTCGTGGTCGCGCTCAGCACGCGCTTCTTGATGGAGTCG 245 Query 25661 GGCTGCATGCCCAGGTCGCGGGCCAACTCCTTCGAGGTACGACCCGCAGCGATGCCCAGG 25720 ||||||| || || || ||||||| ||||| ||||| | || ||| || |||| | Sbjct 246 GGCTGCACACCAAGCTCACGGGCCAGTTCCTTAGAGGTCTGGCCGCAAGCAATCCCCAAG 305 Query 25721 ACGCACTGAAGCTCACGCAGGGACAGGCCCTTGCCGAGGAAGCCGGTGAAGCCGTGTGCG 25780 |||||||||| ||||||| ||||| | |||||||||||||| |||| | | | Sbjct 306 ACGCACTGAACTTCACGCAAAGACAGCTCACGACCGAGGAAGCCGGTCCAGCCATTGGTG 365 Query 25781 GTGAT---GGTGGCGGCGGTCATG 25801 ||||| ||| || ||||||||| Sbjct 366 GTGATCGAGGTTGCTGCGGTCATG 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124995218915168