Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq25063 111 1e-19 seq161123 93.3 3e-14 seq149362 93.3 3e-14 seq117806 89.7 4e-13 seq16096 84.2 2e-11 >seq25063 Length=710 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||| ||||| || ||||||||||| |||| ||| | | ||| Sbjct 157 AGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGGCCATCC 216 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || ||| | ||||||| ||| ||||| || | ||||| ||||| Sbjct 217 TCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 276 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | | ||||| | |||| |||| |||||||| Sbjct 277 TGGATCTTAGC--CTTCACATTGTCAATGGTGTCTGAGCTCTCCACCTCCAAGGTGATGG 334 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||||||||| || |||||||| |||||||| Sbjct 335 TCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 368 >seq161123 Length=4290 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || ||||| | || |||| |||||| || |||||||| ||||||||||| || || Sbjct 2323 CCCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGC 2382 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | | ||||| | || || || ||| | || |||| ||| ||||| || Sbjct 2383 CAGTGTCCTACCATCCTCGAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGG 2442 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| |||||||| ||||| | ||| || | | | ||||| | ||| Sbjct 2443 AATGCCTTCTTTGTCCTGAATTTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCAC 2502 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| || || ||||| || |||| || || ||||| || |||||| Sbjct 2503 TTCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCATT 2551 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || || || |||| || || |||||||| ||||| ||||||||||| || Sbjct 3008 CCACCACGGAGTCTAAGCACCAGGTGGAGGGTGGACTCTTTTTGAATGTTGTAGTCAGCA 3067 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | || ||||| ||| | || |||| || ||||| || Sbjct 3068 AGTGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGG 3127 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || ||||| ||| || | | | | |||||| | || Sbjct 3128 ATTCCCTCCTTGTCTTGGATCTTTGC--CTTGACATTGTCAATAGTGTCAGAGCTTTCAA 3185 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || || || || || ||||| ||||| |||||||| Sbjct 3186 CCTCGAGGGTGATAGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 3234 >seq149362 Length=6446 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || || || |||| ||| || |||||||| ||||| ||||||||||| || Sbjct 1514 CCACCACGGAGTCTGAGAACCAAATGGAGAGTGGACTCTTTTTGGATGTTGTAGTCAGCG 1455 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| | || ||||| ||| | || |||| ||||||||| || Sbjct 1454 AGTGTCCGCCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGA 1395 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || |||||| || || | | | | |||||| | || Sbjct 1394 ATTCCCTCCTTGTCTTGGATCTTTGCT--TTGACATTGTCAATAGTGTCAGAGCTTTCAA 1337 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || || || ||||| ||||| |||||||| Sbjct 1336 CCTCGAGGGTGATGGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 1288 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||| || || |||||||| ||||||||||| || | ||| | ||||| Sbjct 1955 AGAACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCC 1896 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| ||||| || ||| | || |||| ||| || || || | ||||| ||||| Sbjct 1895 TCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTCC 1836 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | ||| || | | | | || ||| | ||| |||| |||||| || Sbjct 1835 TGGATCTTCGCCTTGACATTGTCAATTGTATCGGAGCTTTCCACCTCCAGGGTGATTGTC 1776 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || || || ||||| || ||||| ||||||||| Sbjct 1775 TTCCCAGTAAGCGTCTTTACAAAGATCTGCATT 1743 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||| || || |||||||| ||||||||||| || | ||| | |||| Sbjct 2183 AGAACCAAGTGCAAGGTAGATTCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCT 2124 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||| ||||| || ||| | || |||| ||| || || || | ||||| ||||| Sbjct 2123 TCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTCC 2064 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | | || || | ||| |||| |||||| | Sbjct 2063 TGGATTTTTGC--CTTGACATTGTCAATTGTATCAGAGCTTTCCACCTCCAAGGTGATTG 2006 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 | || || || ||||| || ||||| ||||||||| Sbjct 2005 TCTTCCCTGTAAGCGTCTTTACAAAGATCTGCATT 1971 >seq117806 Length=5035 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || |||||||||||||| | || | ||||||| | || Sbjct 3667 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCCTCGAGCTGC 3608 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || | || || ||||| |||||| || | ||| || ||||| || || Sbjct 3607 TTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTG 3548 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | |||||| || |||| || | ||||||||| || || | Sbjct 3547 GC--CTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCTTCCCCG 3490 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || || |||||||| Sbjct 3489 TTAGGGTTTTCACGAAGATCTGCAT 3465 >seq16096 Length=889 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| |||||||||||||| || || ||||| || | || | | ||| Sbjct 578 AGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCTGCAAGTGTCCTTCCATCC 519 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || ||| |||| | || ||| ||||| || | ||||| || || Sbjct 518 TCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCC 459 Query 16844 GCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 ||||| ||| ||||| | | | ||||| | ||| ||||| ||||||| Sbjct 458 TGAATTTTAGCT--TTCACATTATCAATGGTGTCAGAGCTTTCCACTTCCAAAGTGATGG 401 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || || |||||||| || ||||| Sbjct 400 TTTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404026424361760