Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq161123 113 3e-20 seq185570 111 1e-19 seq142535 109 4e-19 seq16096 109 4e-19 seq149362 107 1e-18 seq123714 104 2e-17 seq204630 93.3 3e-14 seq25063 93.3 3e-14 >seq161123 Length=4290 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||||||| ||||| |||||| || || |||||||| | | Sbjct 2324 CCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCC 2383 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | || || | || ||||| ||||| || || | || || || | ||| Sbjct 2384 AGTGTCCTACCATCCTCGAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 2443 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| |||||| ||| ||||| | | || ||| ||||| ||| Sbjct 2444 ATGCCTTCTTTGTCCTGAATTTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACT 2503 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||||||||| || ||||| || ||||| || || ||||| Sbjct 2504 TCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 2550 Score = 102 bits (112), Expect = 5e-17 Identities = 163/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | ||||| || || ||| ||| ||||| |||||||||| Sbjct 2776 CATT-CCACCACGAAGACGGAGCACCAGGTGGAGGGTGGACTCTTTTTGGATATTGTAAT 2834 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | | ||| | || |||| ||||| |||||||| || || | || ||||| | Sbjct 2835 CTGCGAGCGTACGGCCATCCTCTAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTG 2894 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||||| ||| || |||||| ||| ||| ||| ||||| | || || || || | Sbjct 2895 GGGGGATGCCCTCCTTGTCCTGAATCTTTGCCTTGACATTATCGATTGTGTCAGAGCTCT 2954 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| || ||||| || || || || || | || || || || ||||||||| Sbjct 2955 CAACCTCCAATGTGATGGTCTTCCCTGTGAGAGTCTTGACAAAGATCTGCATG 3007 >seq185570 Length=361 Score = 111 bits (122), Expect = 1e-19 Identities = 81/94 (86%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 25895 TTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTA 25949 || ||| ||||||||||| ||||||||||||| ||| ||||||||| |||| || | Sbjct 268 TTCTAACAAGCCCGTTCCTTTGGCTGTGGTTTTGCTGGATAGTAGACAGGGACAGTGGGA 327 Query 25950 ATCTCGTTAATCCTTTCATGCGCGTCACTAATTA 25983 ||||||||||||| |||||||||||||||||||| Sbjct 328 ATCTCGTTAATCCATTCATGCGCGTCACTAATTA 361 >seq142535 Length=1113 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || ||| |||||||||||||||||| ||| ||||||||| | || || |||||||| Sbjct 725 AAACCCATTCCCTTGGCTGTGGTTTTGCTGGATAGTAGACAAGGACAGTGGGAATCTCGT 666 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||||||||||||||| || Sbjct 665 TAATCCATTCATGCGCGTCACTAATTAGATGATGA 631 >seq16096 Length=889 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | |||||||||||| |||||||| ||||| ||||||||||| |||| Sbjct 365 CCACCACGGAGACGCAACACCAAGTGAAGAGTTGATTCCTTCTGAATATTGTAGTCAGCA 306 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || |||| ||||| || ||||| || || | || || || | || Sbjct 305 AGAGTGCGACCATCCTCTAGCTGTTTCCCTGCAAAAATGAGCCTCTGCTGGTCTGGAGGA 246 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| ||| ||| ||| ||||| | | |||||| ||||||||| Sbjct 245 ATGCCCTCCTTGTCCTGAATCTTTGCCTTGACATTATCAATTGTATCTGAACTTTCAACC 186 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || || || || || | ||| || || || || |||||| Sbjct 185 TCCAAGGTGATTGTCTTTCCGGTAAGGGTCTTGACAAAGATTTGCATG 138 >seq149362 Length=6446 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||||||| ||||| ||| || ||||| |||||||| | | Sbjct 2426 CCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC 2367 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | |||| || | || ||||| ||||| || || | || || || | ||| Sbjct 2366 AGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCTGGGGGA 2307 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| ||| ||| ||| || || | | || ||| ||||| ||| Sbjct 2306 ATGCCTTCTTTGTCCTGAATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTTTCCACT 2247 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||| ||||| || ||||| || ||||| || || ||||| Sbjct 2246 TCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 2200 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | || ||| | ||||| || | || ||||||||||| ||||| | Sbjct 2202 CATT-CCACCACGCAGACGGAGAACCAAGTGCAAGGTAGATTCCTTTTGAATGTTGTAGT 2144 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | | | | | |||| || || ||||| || ||||| || || | || ||||| | Sbjct 2143 CTGCAAGAGTTCTTCCGTCTTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTG 2084 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||||| || || |||||| |||||| ||| ||||| | | ||||| |||| Sbjct 2083 GGGGGATACCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCAATTGTATCAGAGCTTT 2024 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || || || || | || || || || |||||||| Sbjct 2023 CCACCTCCAAGGTGATTGTCTTCCCTGTAAGCGTCTTTACAAAGATCTGCAT 1972 >seq123714 Length=1783 Score = 104 bits (114), Expect = 2e-17 Identities = 78/92 (85%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||| ||| ||||||||| | || || |||||| | Sbjct 843 AAGCCCATTCCCTTGGCTGTGGTTTTGCTGGATAGTAGACAAGGACAGTGGGAATCTCTT 784 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGA 25988 |||| | ||||||||||||||||||||||||| Sbjct 783 TAATTCATTCATGCGCGTCACTAATTAGATGA 752 >seq204630 Length=378 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 207 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 148 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 147 GCCCGTATTTAGCCTT 132 >seq25063 Length=710 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||||||||| ||| ||||| || || |||||||| | Sbjct 368 TACCACCACGGAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTG 427 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || || | || || | || ||||||||||| || || || || || || | || Sbjct 428 CCAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGG 487 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || |||||| ||| || ||| ||||| | | || || || || | Sbjct 488 GAATTCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCGA 547 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || ||||||||||| || ||||| |||||||| Sbjct 548 CCTCAAGGGTGATGGTCTTTCCCGTCAAGGTCTTGACGAAGATCTGCAT 596 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||||||||| ||| ||||| || || ||||| || | Sbjct 140 TACCACCACGAAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTG 199 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || ||| | || || | || ||||||||||| || || | || || || | | Sbjct 200 CCAGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTG 259 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || ||||||||| | | || ||| || || | Sbjct 260 GGATACCCTCCTTGTCCTGGATCTTAGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCA 319 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || || |||||||| || || || |||||||| Sbjct 320 CCTCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334069435692944