Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq105402 89.7 7e-13 seq143833 82.4 1e-10 >seq105402 Length=314 Score = 89.7 bits (98), Expect = 7e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 63272 ATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGA 63331 || ||||| || ||||||||||| ||||| || || ||||| || ||| |||||||| Sbjct 1 ATAGGAATGATGCCATTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTGGCACGA 60 Query 63332 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 63391 || || || || | ||| |||||||| || ||| ||| | || ||| || Sbjct 61 ATGTTGTGAACGGAGACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACATTCCTTC 120 Query 63392 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 || |||||||| ||||| || || |||||||| ||||| | || || |||||| Sbjct 121 AAGGTATCATATATGCCTTCAATGCTATCATCTTTCATGCATACAAGGAAGCAGCTA 177 >seq143833 Length=506 Score = 82.4 bits (90), Expect = 1e-10 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 63217 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63276 || |||| ||| |||||||| | || | || || | |||| |||||| || ||| || Sbjct 381 CCTTTTGCCTCCCCCCTGATCAACATAACGGGCAGTATCATTAAAAACTCGCAGCATAGG 440 Query 63277 AATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATT 63336 ||| || ||||||||||| ||||| || || ||||| || ||| |||||||||| || Sbjct 441 AATGATGCCATTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTGGCACGAATGTT 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631928923910400