Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq214877 96.9 4e-15 seq192585 89.7 6e-13 seq144608 86.0 7e-12 seq4990 84.2 2e-11 >seq214877 Length=6784 Score = 96.9 bits (106), Expect = 4e-15 Identities = 81/97 (84%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | | Sbjct 4509 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGG 4450 Query 126322 CGTGGGTTCGAACCCCACACCTGACA-AATTATTATT 126357 ||||||||| |||||||| |||||| || | ||||| Sbjct 4449 CGTGGGTTCAAACCCCACTTCTGACATAAATTTTATT 4413 >seq192585 Length=6695 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| |||| ||||||||||| |||||||| | ||| |||||| | || || | ||| Sbjct 5043 GTCAGGATGGCGGAGTGGTCTAACGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 5102 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||||||| || ||||| |||||| || ||||| ||||||| || Sbjct 5103 TGGGTTCAAATCCCACTTCTGACATTTTTTTATTTCAATTTTTTTT 5148 >seq144608 Length=7849 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| |||| ||||||||||| |||||||| | ||| |||||| | || || | ||| Sbjct 1788 GTCAGGATGGCGGAGTGGTCTAACGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 1729 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||| || ||||| |||||||||| || || Sbjct 1728 TGGGTTCAAATCCCACTTCTGACAAATTTTTTTT 1695 >seq4990 Length=1458 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/97 (80%), Gaps = 4/97 (4%) Strand=Plus/Minus Query 126272 TTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCG 126331 |||||||||||||||||||||||||||||| | |||||| || | |||||||||| Sbjct 1457 TTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGGTTCA 1400 Query 126332 AACCCCACACCTGACAAATTATTATTGGAATTTTTGT 126368 || |||||| ||| ||| |||| || | ||||||| Sbjct 1399 AATCCCACAGCTGTCAA--TATTTTTTCATTTTTTGT 1365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555364069541760