Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq149362 91.5 1e-13 seq16096 89.7 4e-13 seq55328 86.0 4e-12 >seq149362 Length=6446 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || || || || ||||||||||| ||||| |||| | | Sbjct 2199 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 2258 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | | ||| ||| ||| || ||||| || | || | |||| Sbjct 2259 AGACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 2318 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || || ||||| || || || || || || | || |||| |||||||| Sbjct 2319 GCAGAGGCTCATTTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 2378 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| || || ||||| ||| |||| | ||| |||| || || Sbjct 2379 CATTCAGAAAGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGG 2426 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || ||||| |||| | | || ||||| || |||||||| |||||||| ||||| Sbjct 1609 GACAAGGAGGGCATACCCCCAGATCAGCAGAGGCTCATCTTTGCCGGCAAACAGCTAGAG 1668 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| || | |||||||| ||||| || ||||| ||||||||||| |||| | Sbjct 1669 GATGGCCGCACCCTTGCCGATTATAATATCCAAAAGGAGTCTACTCTTCACCTGGTGCTC 1728 Query 22047 CGTTTACGAGGAGGA 22061 ||| |||| || ||| Sbjct 1729 CGTCTACGTGGTGGA 1743 >seq16096 Length=889 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || || || || ||| |||| ||| || Sbjct 139 ATGCAAATCTTTGTCAAGACCCTTACCGGAAAGACAATCACCTTGGAGGTTGAAAGTTCA 198 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||| ||| || || ||||| | ||| | |||| Sbjct 199 GATACAATTGATAATGTCAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 258 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || || ||||| || ||||| ||||| ||| ||| | || || |||||| Sbjct 259 CAGAGGCTCATTTTTGCAGGGAAACAGCTAGAGGATGGTCGCACTCTTGCTGACTACAAT 318 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| |||||||| |||| || ||| | || || || Sbjct 319 ATTCAGAAGGAATCAACTCTTCACTTGGTGTTGCGTCTCCGTGGTGG 365 >seq55328 Length=456 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||||||||| |||||||||||||||||| | |||||| | |||| | || |||||| Sbjct 13 CAACAGAGACTGATCTTTGCTGGCAAACAATTGGAAGATGGGAGAACTCTTGCGGATTAC 72 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 || || | ||||| || |||||||| |||| || Sbjct 73 AACATCTAAAAGGAGTCGACTCTTCACTTGGTGTT 107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357186296358496