Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4302 111 3e-19 >seq4302 Length=1545 Score = 111 bits (122), Expect = 3e-19 Identities = 253/374 (68%), Gaps = 10/374 (3%) Strand=Plus/Minus Query 42650 GGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGT 42709 |||| | ||||| || || |||||||| | | || || |||| ||| || | || Sbjct 1545 GGCGCAGTGGGCCCTGAAATGGATCGACGGCTCGGAG---ACTTTCGCGGAGCGGATCGT 1489 Query 42710 AGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCT 42769 ||||| || ||| ||||| |||||||||||||| |||| | | || || ||||| Sbjct 1488 GGCCTTCGCCTGCGTGGAGGGGATCTTCTTCTCGGGAAGCTTCTGCGCGATATTTTGGCT 1429 Query 42770 CAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGA 42829 || || | || |||||| || || |||||||||||||| | ||| | || || Sbjct 1428 AAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCGCGAGATGA 1369 Query 42830 GGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTC 42889 || || || | ||||| || ||||| || | ||| || |||| || |||| | | Sbjct 1368 AGGCCTCCACTGCGACTTCGCGTGCCTTCTCTACTC---CCTCCTCCGGATGAAGCTCAC 1312 Query 42890 GAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 ||||||| || | | ||| | | | || || || || |||| ||||||| || Sbjct 1311 CGAGGAGCGCGTGAAGTCAATCGTGCGGAACGCGGTTGACATAGAGAGGGAGTTCGTC-T 1253 Query 42950 GCAGTCGC-TGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATC 43007 || | ||| | ||||| || | || || |||||| || || ||| | |||||||| Sbjct 1252 GC-GACGCGTTACCGTGCGCCTTAGTTGGGATGAACGGTGATCTGATGGGTCAGTACATC 1194 Query 43008 CAGTACGTCGCCGA 43021 ||| |||||| || Sbjct 1193 GAGTTCGTCGCTGA 1180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941801005098240