Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq25629 122 2e-23 >seq25629 Length=702 Score = 122 bits (134), Expect = 2e-23 Identities = 338/503 (67%), Gaps = 24/503 (5%) Strand=Plus/Minus Query 33331 GCGCGGTCGAGCTTCACGTCATACAGGTTGATCGCGAATTCCGGGCCGTTGTAGCCTTCC 33390 ||||| | ||||| | ||| || || ||| ||| | | || ||||||||||| Sbjct 512 GCGCGCGCCAGCTTGATGTCGTAGAGATTGCGGGCGTAGCCGGGCCCGTTGTAGCCACGG 453 Query 33391 GCGAACGTCGCCCACTTCCGGGCACGAAG-CGCCGCTAGCAGCTTCTTGTCGGCCGCG-A 33448 ||||| |||||| || | || || || | | || |||||| | || || || | | Sbjct 452 GCGAAGTCCGCCCATTTGCCTGCGCGCAGGCTCTGC-AGCAGCG-CGGGTTGGGCGTGCA 395 Query 33449 CGTACCGCACGAACGCGTCGAGGTGCTCGGCTTCGCCCAGCTC--CATACGGGACACGAA 33506 | | |||||||| || || |||||| |||| |||| |||| ||| |||| ||||| Sbjct 394 GGAAGCGCACGAAGGCCTCCAGGTGCGCGGCCGCGCC--GCTCGTCATCCGGGCAACGAA 337 Query 33507 TTCGTCGACGCTCGCGTAACCCAGGCGTTTCCAGTGATACGCCATGATCTGGAACGCGCC 33566 || | || ||||| ||||| | |||||| || |||||||||||||| ||| Sbjct 336 GTCCTGGATATCGGCGTAGTCCAGGGTCTGCCAGTGGTAGCCCATGATCTGGAACAGGCC 277 Query 33567 CCAGCTCGCGGACTCGTAAGC--GGATGCCGCATCGA---TGCGCGCCGCGGTGTCGAGC 33621 |||||| || ||||| || || | | | |||| ||| ||| ||| |||| Sbjct 276 CCAGCTGGCCGACTCCAGGGCCAGGTT--CTCGTCGAGCTGGCGGGCCAGGGT---GAGC 222 Query 33622 CGCACGTATTCGGCGGCGCCGCCCTGGTAGCCGCCGCGCTTCGGGTTGACGACGCCCGGC 33681 || ||||| ||||||| |||||| ||| | | ||| ||||| | | || Sbjct 221 CGTTGCCATTCGCTGGCGCCGTTACCGTAGCCACCGGGTTGCGGATTGACCAGGGTGGGA 162 Query 33682 CA-TCGTGCGGCGGCAGCGTCCGCCGCTTCCCTGC--CGACATTCGCGACGAGCCGCTGA 33738 | || || | | ||||| || |||| | | || |||| || | || || || Sbjct 161 TAGTCCTGGGCCAGCAGC-TCGGCCGTGGCGCGGCCGCGACGTT--CCACCAGGCGGGCG 105 Query 33739 TACATGACGTGCCGCTCGAACAGAATCTTCGGCCGGCCGTCGTCCAGAAAGCCGACGCCG 33798 || | ||| || || ||||| || ||| ||| ||||||||||| || |||||| |||| Sbjct 104 TAGAAGACATGGCGTTCGAAGAGGATCACCGGGCGGCCGTCGTCGAGGAAGCCGCTGCCG 45 Query 33799 CGGGACTCAACTTCGTTGACCGC 33821 ||||| || || ||| ||||||| Sbjct 44 CGGGATTCGACCTCGGTGACCGC 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113957873928864