Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq25629 118 2e-22 >seq25629 Length=702 Score = 118 bits (130), Expect = 2e-22 Identities = 338/502 (67%), Gaps = 22/502 (4%) Strand=Plus/Minus Query 34335 GCGCGGTCGAGCTTCACGTCATACAGGTTGATCGCGAATTCCGGGCCGTTGTAGCCTTCC 34394 ||||| | ||||| | ||| || || ||| ||| | | || ||||||||||| Sbjct 512 GCGCGCGCCAGCTTGATGTCGTAGAGATTGCGGGCGTAGCCGGGCCCGTTGTAGCCACGG 453 Query 34395 GCGAACGCTGCCCACTTCCGGGCACGAAG-CGCCGCTAGCAGCTTCTTGTCGGCCGCG-A 34452 ||||| | ||||| || | || || || | | || |||||| | || || || | | Sbjct 452 GCGAAGTCCGCCCATTTGCCTGCGCGCAGGCTCTGC-AGCAGCG-CGGGTTGGGCGTGCA 395 Query 34453 CGTACCGCACGAACGCGTCGAGGTGCTCGGCTTCGCCCAGCTC--CATACGGGACACGAA 34510 | | |||||||| || || |||||| |||| |||| |||| ||| |||| ||||| Sbjct 394 GGAAGCGCACGAAGGCCTCCAGGTGCGCGGCCGCGCC--GCTCGTCATCCGGGCAACGAA 337 Query 34511 TTCGTCGACGCTCGCGTAACCCAGGCGTTTCCAGTGATACGCCATGATCTGGAACGCGCC 34570 || | || ||||| ||||| | |||||| || |||||||||||||| ||| Sbjct 336 GTCCTGGATATCGGCGTAGTCCAGGGTCTGCCAGTGGTAGCCCATGATCTGGAACAGGCC 277 Query 34571 CCAGCTCGCGGACTCGTAAGC--GGATGCCGCGTCGA--TGCGCGCCGCAGTGTCGAGCC 34626 |||||| || ||||| || || | | |||||| || ||| ||| || ||||| Sbjct 276 CCAGCTGGCCGACTCCAGGGCCAGGTT--CTCGTCGAGCTG-GCGGGCCAGGGT-GAGCC 221 Query 34627 GCACGTATTCGGCGGCGCCGCCCTGGTAGCCGCCGCGCTTCGGGTTGACGACGCCCGGCC 34686 | ||||| ||||||| |||||| ||| | | ||| ||||| | | || Sbjct 220 GTTGCCATTCGCTGGCGCCGTTACCGTAGCCACCGGGTTGCGGATTGACCAGGGTGGGAT 161 Query 34687 A-TCGTGCGGCGGCAGCGTCCGCCGCTTCCCTGC--CGACATTCGCGACGAGCCGCTGAT 34743 | || || | | ||||| || |||| | | || |||| || | || || || | Sbjct 160 AGTCCTGGGCCAGCAGC-TCGGCCGTGGCGCGGCCGCGACGTT--CCACCAGGCGGGCGT 104 Query 34744 ACATGACGTGCCGCTCGAACAGAATCTTCGGCCGGCCGTCGTCCAGAAAGCCGACGCCGC 34803 | | ||| || || ||||| || ||| ||| ||||||||||| || |||||| ||||| Sbjct 103 AGAAGACATGGCGTTCGAAGAGGATCACCGGGCGGCCGTCGTCGAGGAAGCCGCTGCCGC 44 Query 34804 GGGACTCAACTTCATTGACAGC 34825 |||| || || || |||| || Sbjct 43 GGGATTCGACCTCGGTGACCGC 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116986919733376