Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_009237.1 Length=37446 Score E Sequences producing significant alignments: (Bits) Value seq7292 167 6e-37 seq104575 138 3e-28 seq23360 107 5e-19 seq20514 100 7e-17 seq100937 80.6 6e-11 >seq7292 Length=1256 Score = 167 bits (184), Expect = 6e-37 Identities = 343/503 (68%), Gaps = 23/503 (5%) Strand=Plus/Plus Query 3581 GCAAGGGCTACGAGATCACCTGGGATTGGGAGGAGCTTTGGCAGGACGCCCAGGCGAAGG 3640 |||| ||||| | | | |||||||||||| |||| | | | ||||| | | | Sbjct 361 GCAAAGGCTATGCGGTTACCTGGGATTGGCAGGACATGCTCGATGCGGCCCACGACCAAG 420 Query 3641 CGTTCACGGTCGCCAAGGTCACGCGCCTGGACATCCTGCAGGACATTCGCAACGCGGTCG 3700 ||||||| || ||||||| || ||||||||| | || |||||| ||| | | | | Sbjct 421 CGTTCACCGTTGCCAAGGCCATGCGCCTGGATCTGCTCTCGGACATCCGCGAATCATTGG 480 Query 3701 AAACCGCAAT-CAGCGAAGGCAAGACGCTGCGATGGTTCACGAAGGAGCTGACGCCTGTC 3759 | | ||| | ||| ||||||||||| |||| |||||| ||||| ||| ||||||| Sbjct 481 AGAGCGCCCTGCAG-GAAGGCAAGACCCTGCAGCAGTTCACCAAGGAACTGCAGCCTGTC 539 Query 3760 CT---GCAATCCAAGGGCTGGTGGGGAAAGCAGGAACACGTCGA---CCAGGGCACCGGC 3813 || |||| ||| || |||||||| ||||||| | ||||| |||||||| | Sbjct 540 CTGGAGCAA--CAA-GGTTGGTGGGGCAAGCAGGTCCTGGTCGACAGCCAGGGCAATGCG 596 Query 3814 GAGATCACCCAGGTTCAGCTCGGCAGCCCGTGGCGCCTGCAGACCATCTACCGGACGAAC 3873 ||||| ||| ||||| || ||||| | || || |||| ||||||| ||| ||| Sbjct 597 GAGAT------GGTCCAGCTGGGTAGCCCACGCCGGCTTAAGACGATCTACCAGACCAAC 650 Query 3874 CTGCAAACCGCCTACATGGCGGGCCGCTATGCCGAGCAAATGGCGAAC---GTCGGCGAT 3930 ||||| | |||||| ||||| || ||| | ||| |||| | || |||| Sbjct 651 CTGCAGAGCGCCTATATGGCCGGTCGCAAATCCG---CCATGGAGGACACGGTCGAGACC 707 Query 3931 CGGCCGTACTGGATGTACGTGGCGATCCTCGACAGCCGCACGCGCCCGAGCCATCGGGCA 3990 | |||||||||| ||| | ||| | | || || || || || |||||| || Sbjct 708 CATCCGTACTGGAGCTACATCGCGGTGATGGATGGCAAGACCCGACCTAGCCATGCTGCG 767 Query 3991 ATGAACGGCAAGGTGTTCCGCTACGACGATCCGTTCTGGCAGTCGTTCTACCCGCCGAAC 4050 | ||||| ||||| ||| | ||||| ||| ||||| | ||| |||||| ||| Sbjct 768 CTCAACGGTGTGGTGTACCGACATGACGACCCGATCTGGTCCACCATCTTCCCGCCCAAC 827 Query 4051 GGCTGGGGCTGCCGGTGCCGCGT 4073 || | |||||| |||||||| Sbjct 828 GGGTTTAACTGCCGCTGCCGCGT 850 >seq104575 Length=316 Score = 138 bits (152), Expect = 3e-28 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 8807 GTCGTGAAGTCGGCCGTCATCGGCCTGATCGGCACGGCGCCGATCGGGCCTGTTAATACG 8866 || |||||||||||||| |||| | |||| ||||| || || | |||||| || || || Sbjct 19 GTGGTGAAGTCGGCCGTGATCGCCTTGATTGGCACCGCACCCACCGGGCCGGTGAAGACC 78 Query 8867 CCGGTGCAGTCGCTGTCCGACGTCGACGCCGCACAGTTTGGGCCGCAGCTCGCGGGTTTC 8926 | | | ||||||| |||| |||||||||| ||||| || | || | || || ||| Sbjct 79 CTGACGGTGTCGCTGAACGACATCGACGCCGCCCAGTTCGGCACTCATTTGGCCGGGTTC 138 Query 8927 ACGATCCCGCAAGCGCTCGACGCGGTCTACGACTACGGCAGCGGCACGGTGATCGTGATC 8986 | || || | || || |||| ||||||||| |||| ||||||||| || || | Sbjct 139 AGCATTCCCGAGGCCCTGGACGGCATCTACGACTTCGGCGCCGGCACGGTCATTGTCTAC 198 Query 8987 AACGTGCTCGATCCGGCAGTCCAC 9010 ||||||||||||||||| |||||| Sbjct 199 AACGTGCTCGATCCGGCGGTCCAC 222 >seq23360 Length=738 Score = 107 bits (118), Expect = 5e-19 Identities = 111/142 (78%), Gaps = 5/142 (4%) Strand=Plus/Plus Query 28199 ACATAGCCTCGCGCACATAGCGGATGTCGGGGCTCACGAACATGTCTTCGTGCGAC-TGG 28257 |||| | ||| || || |||||||| |||||||| || ||||||||||| ||| | || Sbjct 31 ACATGGACTCACGGACGTAGCGGATATCGGGGCTTACATACATGTCTTCG-GCGTCCTGC 89 Query 28258 ATGTCATCCGCGAACGGGTCGCGGAACAGGCCGAAGTGCTTACGGGTGGCTGGTGCGAGA 28317 | ||||| || ||| |||||||| |||||||| || || ||||||||||||| || Sbjct 90 AGCTCATC---GAGCGGATCGCGGAAAAGGCCGAATTGTTTTCGGGTGGCTGGTGTCAGC 146 Query 28318 ACCTGTTTGCGCAGTAACATGG 28339 ||||||||| || || ||||| Sbjct 147 ACCTGTTTGGCCATTAGCATGG 168 >seq20514 Length=790 Score = 100 bits (110), Expect = 7e-17 Identities = 193/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 31897 CGACCGGTCGGAATATCGATGATCAGACGGCCGGCGCTGGCTGCGACCCACCGGGTTACG 31956 ||||| | |||| |||||| | ||| |||| ||||| || | ||| || || || Sbjct 380 CGACCAGCGGGAACATCGATTAGCAGCTTGCCGCCGCTGCTGGCCAGCCAGCGTGTCACC 439 Query 31957 AAATCAGTGCCGCAGGCGTCTTCGAACGGCCGGATCAGCGAGATTGGCATGCGGCCCGAC 32016 || ||||||| || | ||| | | |||||||| |||||||| |||| Sbjct 440 AAGCTGATGCCGCATGCCTGTTCATAGGCAGGGATCAGCACAGCGGGCATGCG-CCCGTT 498 Query 32017 TGGAA-CCACTTGTAGAGGGTCCAGTGGTCGGCGAGCCCCATGTGTTCAGAGATTCGCTC 32075 | || ||||||||||||||||||||| || | || ||||| | | | ||| ||||| Sbjct 499 GGCAATCCACTTGTAGAGGGTCCAGTGATCCTCCAGTCCCATCAGAGCGGCGATGCGCTC 558 Query 32076 GACGCTGAGATTGCGCCGCTCGCGCGCATGCTCTTTACAGAGTTCGAGCGCGTGCCTAAG 32135 || |||| | ||| ||||| ||| |||| | || || | ||| |||| | ||| Sbjct 559 GATGCTGTGGTTGAAGCGCTCCTTCGCGTGCTGCTGGCACAGCTTGAGAGCGTCACGAAG 618 Query 32136 GCTATGCGGCTGAATGCGTTTCCAATTGCGGCGGCTCATTGG 32177 | | | |||||| | ||| ||||| | || |||||||||| Sbjct 619 GTTGTTCGGCTGCACGCGCTTCCACTGACGAGGGCTCATTGG 660 >seq100937 Length=322 Score = 80.6 bits (88), Expect = 6e-11 Identities = 140/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 6322 TTCATCGGCCAGACCCTGATGCCGGTCGTCGAAGTGGAAAAGGAAGGCGGCAAGATTCCG 6381 |||||||| || | ||| | || ||| | |||| ||||||| ||| | |||||| Sbjct 46 TTCATCGGTGAGGCGCTGTTCCCCATCGCCCTGATGGACAAGGAAGCCGGGATCATTCCG 105 Query 6382 AAGTTCGGCAAGGAATCGTTCCGCCTCTATCAGACGGAACGTGCGCTGCGCGCGAAGTCG 6441 ||||||||||||| ||||| | || | || |||||||| || ||||| |||| Sbjct 106 CTGTTCGGCAAGGAAGCGTTCGAGGTGTACGACACCGAACGTGCACTCCGCGCCCAGTCC 165 Query 6442 AACCGCATGAATCCGGAAGACATCGATAGCGTCGACGTGAACCTCGACGAGCACGATCTC 6501 ||| ||||||||| || || | | | | || ||| ||| || || || || Sbjct 166 AACATCATGAATCCAGATGATGTTGGTGAACTGGATGTGGTCCTGCGTGAACATGACATC 225 Query 6502 GAGTATCCGATCGACTACCGGGAA 6525 | ||||| |||||||||| ||| Sbjct 226 GCCTATCCAGTCGACTACCGCGAA 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119399942523904