Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq115971 352 7e-93 seq25629 147 5e-31 seq132854 141 2e-29 seq6532 127 5e-25 seq45878 89.7 1e-13 >seq115971 Length=1990 Score = 352 bits (390), Expect = 7e-93 Identities = 1194/1835 (65%), Gaps = 60/1835 (3%) Strand=Plus/Minus Query 14369 CATCGACCTGTCGCAGCTGCCGGCGCCGGCCGTGGTCGAAACGCTCGACTACGAAGCCAT 14428 |||||||||| ||||| ||||||||| ||||||||| | || |||| |||| | | Sbjct 1860 CATCGACCTGAGTCAGCTACCGGCGCCGAGCGTGGTCGAGCCACTGGACTTCGAAAGCCT 1801 Query 14429 CCTGGCCGAGCGGAAAGACTACTTTGTGTCGCTGCACCCCGCCGACCAGCGGGACGCCGC 14488 ||| | ||| || || ||| ||| || ||||| | | ||| || | || Sbjct 1800 GCTGCAGGCGCGCAAGGAGCGCTTGGTGAGCCTCTGGCCCGCGGCCGAGCAGGCCACCCT 1741 Query 14489 GCGCGCCACGCTGGCGCTGGAATCCGAGCCGATCACCAAGCTCTTGCAGGAGAACGCCTA 14548 ||| ||| ||||||||||||||||||||| | |||||| | | |||| ||| |||| Sbjct 1740 GCGTGCCCGCCTGGCGCTGGAATCCGAGCCGCTGACCAAGTTGCTCGAGGAAAACACCTA 1681 Query 14549 CCGCGAGCTGGTGTGGCGCCAGCGCGTGAACGACGCGGCGCGTGGGGTCATGCTGGCCTT 14608 ||||| || ||| |||||||||||| ||||| || || | || |||||||||| Sbjct 1680 TCGCGAATTGCTGTTGCGCCAGCGCGTCAACGAGGCAGCCCAGGGCACCATGCTGGCCAA 1621 Query 14609 CGCCGAAGGGGAAGACCTGGAGCAGATTGCGGCGAACTTCAACGTGCAGCGTCTGACCAT 14668 ||| || |||||||| ||||| || ||| | ||||| || || ||| | Sbjct 1620 GGCCCGTGGCAGTGACCTGGAACAGATCGCCGCGGGCGTCAACCTGACACGCCTGGTGGT 1561 Query 14669 CACGCCGGCTGACACCACCACCGTGCCGCCGACGCCCGCCGTGATGGAGGGCGACGACTC 14728 ||| || || | ||| | |||| ||||| || |||||||| |||| |||||| | Sbjct 1560 CACCCCCGCCCCCCCCAGCGCCGTACCGCCTACCGCCGCCGTGCTGGAAACGGACGACGC 1501 Query 14729 GCTGCGCGAGCGCGCACAGGAAGCGTTTGAAGGGCTGTCCGTGGCCGGCCCGACCAAGGC 14788 ||||||||||| | ||| || | || || || ||||||||| ||| ||| || Sbjct 1500 CCTGCGCGAGCGGGTGCAGATGGCCTGGGAGGGCCTCAGCGTGGCCGGACCGCGCAACGC 1441 Query 14789 CTACGAGCAGTTCGCGCGCTCGGCTGACGGCCGGGTGGCGGACGCGCGCGCGATCAGCCC 14848 |||| | | |||||| || ||| | |||||| ||||| |||| | |||||| Sbjct 1440 CTACATCCTGCATGCGCGCAACGCCAGCGGTCAGGTGGCCGACGCCAGCGCCACCAGCCC 1381 Query 14849 GGCCGGCGCGGAGGTGGTGGTCTCGGTGCTGTCGC---ACCTGAACGACGGCGCGGCCGA 14905 | ||| | |||| ||| | |||| | | | | ||| | |||| || Sbjct 1380 CAGCCCCGCCGTGGTGACCGTCACCGTGCAGAGCCTGGAAGGGGACGGCAGCGCCTCCCC 1321 Query 14906 CGAGAGCCTGCTGGCGGCTGTACGCACCGCGTTGAGCGATGACGATACCCGGCCGCTCGG 14965 |||| ||||||| | || || || | | || || || || ||| | || Sbjct 1320 CGAGT---TGCTGGCCACCGTCAGCCAGGCCCTCAATGACGAAGACGTGCGCCCGGTAGG 1264 Query 14966 CGACCGCCTGACGGTGCAATCCGCCACCATCGTCCCATACCGCATCCGTGCCACGCTGTA 15025 || ||||||| ||||| ||||| ||| || | |||| || ||| |||| | Sbjct 1263 TGATCGCCTGATCGTGCAGTCCGCGCAGATCCTCACCTACCAGGTCAAGGCCGTGCTGCA 1204 Query 15026 CCTGGC----ATCGGGGCCGGCGGCCGAGCCGATCCTGGACGCGGCT-GGCA--AGCGGG 15078 ||||| | ||| |||| ||| ||| ||||||| | | || |||| || || Sbjct 1203 CCTGGTCAATACCGGTGCCGAGGGC-GAGGTTATCCTGGCCACCGCCCGGCAGCAGTTGG 1145 Query 15079 CCGACGTCTACCGCACCACGCGGCGGCGCATCGGTC-GCGACATCAACCGCTCGGCGATC 15137 || || |||| || | ||| || ||| |||| |||| | ||||| | ||| Sbjct 1144 CC-AC--CTACGTCAACCAGCGCCGCCGCCTCGGCGTGCGAG-TGTCGCGCTCCGGCATC 1089 Query 15138 ACGGCGGCGCTGCATGTGGAGGGCGTGGAAAAGCTGGTGCTGCACGAACCGGCCGAAGAC 15197 || || ||||| || | ||||||| | | | ||| || | || ||| | ||| Sbjct 1088 GATGCCGCCCTGCACGTCGCCGGCGTGGCCTGGGTCGAGCT-CAAGGACTGGCAG--GAC 1032 Query 15198 ATCGCGCTCGATCTGA-CGCAGGCGGGCTACTGCACCGGCGTGGATATCGTCAACGGGGG 15256 | | | ||| | | | ||||||| ||| ||||||| | | ||| | | ||| Sbjct 1031 CTGACCC-CGAGCGAAGCCCAGGCGGCCTATTGCACCGCCAGC---AGCGTTACCTTGGG 976 Query 15257 CACCAGTGAGTAGCGCAACCCTGTTGCCGCCGAACGCGACGCCGCTGGAGCGTCGCGCCG 15316 | | ||| | ||| || ||||||| ||| || ||||| || | ||||| Sbjct 975 CGTC--TGACCATGAACACCTTGCTGCCGCCCAACAGCACCTACCTGGAACGGCTCGCCG 918 Query 15317 CGCAGACGGGCGCACGCATCGAACGCGTGCCGGTGCCGCTGCGCGACCTGTGGAACCCAG 15376 | || | || |||||| ||||| || || |||||||||||| | || | Sbjct 917 CCGAGGCCCTGGCCGGCATCGGCGAGGTGCCCGTCCCACTGCGCGACCTGGCCGATCCCG 858 Query 15377 CCACCTGTCCGGCCGAGCTGTTGCCCTTCCTGGCCTGGTCGTTTTCCGTGGACCGCTGGA 15436 | || |||| | ||| |||||| |||||||||| || || ||||| |||||| Sbjct 857 ACCGTTGCCCGGAGGCACTGCTGCCCTACCTGGCCTGGGCGCGCTCGGTGGATCGCTGGG 798 Query 15437 ACCCGGCCTGGCCGCTCGCCACCAAGCGCGCCGTGACG--GCCGCCTCCTACTTCGTGCA 15494 || | |||| | ||||||||||| |||| | || | | ||||||| || Sbjct 797 ACAGCGACTGGAGCGACACCACCAAGCGCCAGGTGATCAAGTCGGCGC--ACTTCGTCCA 740 Query 15495 CCGCAAGAAGGGCACGATCGGCGCGCTTCGCCGCGCGGTGGAGCCGCTGGGCTTCCTGAT 15554 | | | |||||||| |||||||| || ||||| | |||||| || ||||||| |||||| Sbjct 739 CGCCCACAAGGGCACCATCGGCGCCCTGCGCCGGGTGGTGGAACCCCTGGGCTACCTGAT 680 Query 15555 TCGCGTCATCGAGTGGTGGCAGACCAACCCGCCCGGGCCGCGCGGGTCGTTCGGGCTCGA 15614 |||||| ||||||||||||| | |||| |||| | | || | ||| | || || Sbjct 679 CCGCGTCCACGAGTGGTGGCAGGAGAGCCCGACCGGCACTCCGGGCACCTTCCGCCTGGA 620 Query 15615 TGTGGGCGTGCTGCAAACCGGCATCGACGAGGCCATGTACGCCGAGCTGGAACGCCTCAT 15674 || |||||||| | | ||||||| |||| ||||||||| || || | | || || Sbjct 619 CGTCGGCGTGCTCGACAGCGGCATCACCGAGACCATGTACGACGCCATGAACCTGCTGAT 560 Query 15675 TGACGACGCCAAGCCGTGTTCCCGGCCGATGCTCGGCCTGCAAATCAGCCTGGAGGTGCG 15734 ||||||||| ||| ||||| || |||||||| |||||||||||| || Sbjct 559 CGACGACGCCCGCCCGGTCGGCCGGCACCTGGTCGGCCTGGCCATCAGCCTGGAGACCCG 500 Query 15735 CGGCACCCAGGCCGCCAGCG------CCGCCGCCTATCTGGGCGACGTGCTGACCGTCTA 15788 || |||| ||||| | | |||| | |||||| ||||||||||| Sbjct 499 TGG------TGCCGTCAGCGTTGGGCTCTGCACCTACCAGGGCGAAACCCTGACCGTCTA 446 Query 15789 CCCCTACGAGCCGCCCGACATCGTCGTGAGCGGC--ACCGCGGCT--GTCTCGGCCGCTT 15844 | ||||| | || | ||||||||| |||||| | | ||| | |||| || Sbjct 445 CGCCTACCAACCCGAAGCCATCGTCGTCAGCGGCCAGGCCCTGCTCGGCGCCGGCAGC-A 387 Query 15845 CCCACGCCATCGACACCCTGACCGTCACTCAATAACGCCATGCCCCAGACCTTCTTCATC 15904 ||||| | |||||||||||| | || || ||||| |||||||| || | Sbjct 386 CCCACATCCTCGACACCCTGAGCATC------TA--TCCATGAGCCAGACCTACTACGCT 335 Query 15905 GTGCCGACCGCCGCCGGCGAGGCCCGCGACGCCAACGCCAAGGCGCTTGGC-CAGGCGCG 15963 | | || ||| |||||||||| ||||||||| ||||| | | | | Sbjct 334 ATCCTCACGGCCATCGGCGAGGCCAAGCTGGCCAACGCCGCCGCGCTCAACACCACCTTG 275 Query 15964 CAAGTACACCCACATCGCCGTGGGCGACGGCGGCGGTGTGCTGCCCACGCCCGACCGCGC 16023 || | | || | || || || ||||| ||||| || | | ||||||||||| ||| | Sbjct 274 AAAAT-CGCCAAGATGGCGGTCGGCGATGGCGGTGGCGCGGTGCCCACGCCCACGCGCAC 216 Query 16024 CCGCGCCGCCCTGGTCAACGAGTGCTACCGCGCGCAGATCAACGCGATTTGGCAGGATCA 16083 || | ||||||| | |||||| |||||||| |||| | | |||| Sbjct 215 CCAGACGGCCCTGGCCGGCGAGTGGTACCGCGCCGGCCTCAATACCCTGAACGTCGATCC 156 Query 16084 GGCCAATCCTGGCCAGTTCATTGCCGAGCTGGTGATTCCCGAGACCGTGGGTGGCTGGTG 16143 |||| ||||| |||||||||| ||||| || |||||| || || ||| || Sbjct 155 CAACAATAGCAGCCAGATCATTGCCGAACTGGTCATCCCCGAGGCCACCGGCGGCAACTG 96 Query 16144 GGTTCGTGAGCTGGGCCTCATCGACGCGGACGGCA 16178 | | || || |||| || |||| ||||||| Sbjct 95 GATCCGCGAAATGGGGCTGTACGACAGCGACGGCA 61 >seq25629 Length=702 Score = 147 bits (162), Expect = 5e-31 Identities = 372/548 (68%), Gaps = 36/548 (7%) Strand=Plus/Plus Query 10330 GTGCCCCTGGAGGCGGTGCGCGCGGTCAACGAGGTTGAGAGCCGGGGGAGCGGGTTCCTG 10389 |||||||||| || || | ||||||| |||||| || ||| || ||||| ||||| Sbjct 1 GTGCCCCTGGCCGCTGTCCAGGCGGTCACCGAGGTCGAATCCCGCGGCAGCGGCTTCCTC 60 Query 10390 CCGGACGGACGGCCCGTGATCCTGTTCGAGCGGCACGTCATGTAC---CGGCAGCTG--- 10443 ||||| || || |||||||| ||||| || || ||| | ||| || | | || Sbjct 61 GACGACGGCCGCCCGGTGATCCTCTTCGAACGCCATGTCTTCTACGCCCGCCTGGTGGAA 120 Query 10444 CG-CGAGGCCGA-CCAGGATGCGGACGCGCTCGCGGCTCGG---TATCCCAACATCGTCA 10498 || || ||||| ||| ||| || ||| ||| | | ||||||| | | |||| Sbjct 121 CGTCGCGGCCGCGCCA-----CGGCCGAGCTGCTGGCCCAGGACTATCCCACCCTGGTCA 175 Query 10499 ACCCGAGCCGTGGCGGCTACGTGGGCAAGGCCGGGGAGCACATG----CGGCTCGCTCAG 10554 | ||| | || ||||||| | || | || ||| ||| |||||| | | | Sbjct 176 ATCCGCAACCCGGTGGCTACG---GTAACGGCGCC-AGCGAATGGCAACGGCTCACCCTG 231 Query 10555 GCCATCGCCA--TCGACCGCGAT--TGCGCCCTTGCGTCGGCGAGCTGGGGGCTGTTTCA 10610 ||| ||||| ||||| | || || ||||| | |||||| |||||||| ||||| || Sbjct 232 GCC--CGCCAGCTCGAC-GAGAACCTG-GCCCTGGAGTCGGCCAGCTGGGGCCTGTTCCA 287 Query 10611 AGTCATGGGATACCACTGGGAGCGGTTGGGGTAT-CCGAGCGTGCAGGCATTCGCGGACG 10669 ||||||| ||||||||| || ||| || |||| | |||| |||| | | Sbjct 288 GATCATGGGCTACCACTGGCAGACCCTGGACTACGCCGATA-TCCAGGACTTCGTTGCCC 346 Query 10670 CCATGCAAAGCGGCGAGGGAGCGCAGCTCGACGCCTTCGTGCGGTTCGTCACCAGTGACC 10729 ||| ||||||| || ||||| || || ||||||||||| ||| | | | | Sbjct 347 GGATGACGAGCGGCGCGGCCGCGCACCTGGAGGCCTTCGTGCGCTTCCTGCACGCCCAAC 406 Query 10730 CCGCCTTGCACAAGGCGCTCACGGGCGGG-AAGTGGTCCGCCTTCGCCGCGCTCTACAAC 10788 |||| ||| || || || || || || ||| | | ||||||| ||||||| Sbjct 407 CCGCGCTGCTGCAGAGCCTG-CGCGCAGGCAAATGGGCGGACTTCGCCCGTGGCTACAAC 465 Query 10789 GGGCCGGCCTACAAGGACAACCTGTACGACGTGAAGCTGGCGCGCGCCTTCGCACGCTAC 10848 ||||| | |||| ||| || |||||| | |||||||||||||||||||| |||||| Sbjct 466 GGGCCCGGCTACGCCCGCAATCTCTACGACATCAAGCTGGCGCGCGCCTTCGCCCGCTAC 525 Query 10849 CAGGCCGA 10856 ||||| || Sbjct 526 CAGGCGGA 533 >seq132854 Length=843 Score = 141 bits (156), Expect = 2e-29 Identities = 141/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 17090 ATCGGGTATTTCGCGCGCTCCACCGCCCCGAGCGGATGGCTCAAGGCCAACGGCGCGGCG 17149 |||| || ||||| ||| ||||||| |||| || | ||||| |||||||| || || Sbjct 231 ATCGAATACTTCGCCCGCACCACCGCTCCGAATGGCTATCTCAAAGCCAACGGTGCCGCC 172 Query 17150 GTCAGTCGTACGACCTACGCGGCGCTGTATGCCGAGATTGGCACCACGTTCGGCGCGGGC 17209 ||||| || || ||||| ||| |||| | |||| || || ||||| ||||| || ||| Sbjct 171 GTCAGCCGCACTACCTATGCGACGCTATTCGCCGCCATCGGTACCACCTTCGGGGCCGGC 112 Query 17210 GACGGCGCCGCCACGTTCAACCTCCCGGACCTGCGCGGCGAATTCCTGCGCGGCTGGGAT 17269 ||||| || |||| ||||| || || || |||||||| || ||| | |||||||||||| Sbjct 111 GACGGTTCCACCACCTTCAATCTGCCCGATCTGCGCGGTGAGTTCATCCGCGGCTGGGAT 52 Query 17270 GAC 17272 ||| Sbjct 51 GAC 49 >seq6532 Length=1314 Score = 127 bits (140), Expect = 5e-25 Identities = 221/314 (70%), Gaps = 8/314 (3%) Strand=Plus/Plus Query 22979 GCTGGGCCGGGTGCTGCTGCTGAACCCGATTGGCCTGCTGGTGACGGCAATTGCGGTCGC 23038 ||| ||||||| ||||||| ||||||| || |||||| |||| || | || ||| | Sbjct 815 GCTCGGCCGGGCGCTGCTGATGAACCCCATCGGCCTGTTGGTCACTGGCATCGCGCTGAG 874 Query 23039 GGCCTACCTGATCTACCGGTACTGGGAGCCGATCAGCGCCTTCTTCTCGGGGCTGTGGCA 23098 || |||||||||||||| ||||||||||| |||| | ||||||| ||||| ||| | Sbjct 875 TGCATACCTGATCTACCGCTACTGGGAGCCTATCAAGGGCTTCTTCGGTGGGCTCTGG-A 933 Query 23099 GC-AGGTGAAGACGGCGTTCGACGGCGGCATCGCCGGTGTGTCCGCACTGATCCTGAACT 23157 || || | || | ||| |||| ||| | || || | || |||||||| |||| Sbjct 934 GCGAGATCAAATCTAGTTTCAACGGAGGCCTGGCAGGGATTGGGGCGCTGATCCTCAACT 993 Query 23158 GGTCGCCGGCGGGCCTGTTCTACGCCGCGCTCGCGCCGGTGT--TGCAGTGGTTCGGGTT 23215 || | |||||||||||| ||| || ||| ||||| || | ||||| | Sbjct 994 TCAGCCCCGTGGGCCTGTTCTA--CCGGGCATTCGCTGGTGTGATGAGCTACTTCGGCGT 1051 Query 23216 CGACGTGCCGGCCAAGTTCACCGAGTTCGGCGCCAACATCGTGCAG-GGGTTGGCCAACG 23274 || |||| | ||| ||||| |||||||||| || ||| | ||| || ||| || | Sbjct 1052 TGAGTTGCCAGGCAAATTCACAGAGTTCGGCGGCATGATCAT-CAGCGGCCTGGTCACTG 1110 Query 23275 GCATCCGCAGCGCC 23288 | ||| ||| |||| Sbjct 1111 GTATCGGCAACGCC 1124 >seq45878 Length=508 Score = 89.7 bits (98), Expect = 1e-13 Identities = 167/242 (69%), Gaps = 9/242 (4%) Strand=Plus/Minus Query 22354 TGGACCCGGGCGCGCTGAAGGGGGCGGACCTGTTCCGCCAGAACCAGTTCGCGTGGCTGG 22413 ||||| | |||||||| ||||| ||||||||| |||| ||||| ||| |||||| Sbjct 305 TGGACGCCGGCGCGCTCAAGGGCAGCGACCTGTTCGCCCAGGACCAGGCCGCCTGGCTGC 246 Query 22414 AGAAGGTGCTGCTGCCGACGCTGGCCGCCAAGGGCATCACC---GACCGCAAACAGGTCG 22470 | |||| |||||||| |||| ||||||||||||| | |||||| |||||| Sbjct 245 AACAGGTCCTGCTGCCAGCGCTCAAGGCCAAGGGCATCAGCGGTGACCGC---CAGGTCC 189 Query 22471 AGGACGCCATCGGCAGCATCTTCTCGAACCGCACGGCGGCGGGCCTGTTCGCGCAGATGT 22530 ||| || || ||| |||| | | || | | | || | || ||| | ||| | | Sbjct 188 TCGACACCCTCCGCACCATCCTGCCCAATCAAGCCGGTGCCGAACTCTTCACCCAGTTCT 129 Query 22531 ACCTGCAGCGCCAGCAGATCCACAAGAACATGCGCCTGAACGAAGGCGCCGCCGGCATCG 22590 | | ||||||| | || || | ||| || ||||| ||| ||||||| || |||| Sbjct 128 ATCAGCAGCGCAAACAACTCGAACAGAGCA-GCGCCAAGACG--CGCGCCGCGGGTATCG 72 Query 22591 AT 22592 || Sbjct 71 AT 70 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123594005945536