Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq149362 86.0 5e-12 seq25063 84.2 2e-11 >seq149362 Length=6446 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTC-- 33967 || || ||||||| ||| || || ||| ||||||||||||||||||||| | |||| Sbjct 2417 AGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC-AGTGTCCT 2359 Query 33968 GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCT 34027 || |||| || | ||||| || ||||| || || | |||||| || || | || | Sbjct 2358 GC-CGTCCTCAAGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCTGGGGGAATGCCTT 2300 Query 34028 CTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA-TTCGACC 34086 |||||||| ||| ||| ||| | | | | | || | || || || ||| | Sbjct 2299 CTTTGTCCTGAATCTTTGCCTTGACGTTATCAATTGTGTCTG-AGCTTTCCACTTCCAAA 2241 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || || ||||| ||||| | || |||||||| ||||||||| Sbjct 2240 GTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCATT 2199 >seq25063 Length=710 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||||| |||||| ||| |||||||| |||||||||||||||| || Sbjct 379 AGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGG 438 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||||| |||||||| ||||| |||||||| ||| || | | ||| Sbjct 439 CCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCC 498 Query 34030 TTGTCCATAATTTT 34043 |||||| ||| || Sbjct 499 TTGTCCTGAATCTT 512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396021856289248