Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4302 104 5e-17 >seq4302 Length=1545 Score = 104 bits (114), Expect = 5e-17 Identities = 295/441 (67%), Gaps = 18/441 (4%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||| |||| | ||||| || || || | || || || || ||| Sbjct 1505 TTCGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAGGGGATCTTCTTCTCGGGAAGCTTC 1446 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAG----GTGTGATGCCTGGCCTCGGTCTGTCTAA 243404 ||||| || |||||||| || |||| | ||||||| || || | || || Sbjct 1445 TGCGCGATATTTTGGCT----AAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAA 1390 Query 243405 CGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAA 243463 |||||| ||| || || || ||||| ||| | |||| ||| ||| | || || Sbjct 1389 CGAGTTGATCTCGCGAGATGAAGGCCTCCACTGCGACTTCGCGTGC-CTTCTCTACTCCC 1331 Query 243464 AGCTCCAGAACAAGCT-ACCATTCGAAACG-GTCAAACAAATCATCACAGAA-GCAGTTG 243520 |||| || ||||| ||| | | || || || |||| | | ||| || |||| Sbjct 1330 TCCTCCGGATGAAGCTCACCGA--GGAGCGCGTGAAGTCAATCGTG-CGGAACGCGGTTG 1274 Query 243521 AAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTA-TTGGCATGAACTCT 243579 | | || | ||| ||| | |||||||| | || ||| | |||| |||| |||||| | Sbjct 1273 ACATAGAGAGGGAGTTCGTCTGCGACGCGTTACCGTGC-GCCTTAGTTGGGATGAACGGT 1215 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 || || ||||| ||||||||||| ||||| || || | | | ||| | || ||| Sbjct 1214 GATCTGATGGGTCAGTACATCGAGTTCGTCGCTGATAGGCTGCTGGGTGCGTTGGGATAT 1155 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 | |||| |||| | ||||||| |||| | |||||||| ||| ||||| ||| Sbjct 1154 GGGAAACTGTATGATGTGCAGAACCCATTTGATTGGATGGAGCTGATTAGTCTTCAGGGG 1095 Query 243700 AAAACTAACTTCTTCGAAAAG 243720 || || || ||||| || ||| Sbjct 1094 AAGACCAATTTCTTTGAGAAG 1074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1099841571114400