Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4302 111 2e-19 >seq4302 Length=1545 Score = 111 bits (122), Expect = 2e-19 Identities = 327/496 (66%), Gaps = 15/496 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| |||||||| | |||||| ||||| || |||||||| | | || || |||||| Sbjct 1059 GTACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTAATCAGCTCCAT 1118 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGC---ACCCCAATCTGTTTGAGGAG 125874 ||||||||||||||| | || | ||| | | ||||| | || || Sbjct 1119 CCAATCAAATGGGTTCTGCACAT--CATACAGTTTCCCATATCCCAA-CGCACCCAGCAG 1175 Query 125875 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT 125934 | ||| | |||| |||| ||||||| | |||| ||| |||||| || | | | Sbjct 1176 CCTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGC 1235 Query 125935 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGC 125994 || || | |||||| ||| |||| || |||| || || || || | ||||||||| | Sbjct 1236 GCACGGTAACGCGTCGCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCGCACGATTGA 1295 Query 125995 GTGAATGGTGTCCACCCC-AGGTCTATT--GCGCAAAGTCTTGAAGAGTTCCACGGCAAA 126051 | | | ||| | || | || | | | | | || || |||| | || Sbjct 1296 CTTCACGCGCTCCTCGGTGAGCTTCATCCGGAGGAGGGAGTAGAGAAGG--CACG-CGAA 1352 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || |||||| || || || || ||||| | || ||||||||| ||| || ||||| Sbjct 1353 GTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCAT 1412 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 | || ||||| || | ||| || ||||| || || |||||||||||||| ||||| Sbjct 1413 CAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGATCCCCTC 1472 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTT 126231 ||| || ||||| || | || ||||| || || | ||| ||| | ||| || Sbjct 1473 CACGCAGGCGAAGGCCACGATCCGCTCCGCGAAAGTCTCCGA---GCCGTCGATCCATTT 1529 Query 126232 CATCGCCCACTGCGCC 126247 || |||||||||||| Sbjct 1530 CAGGGCCCACTGCGCC 1545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595748032993920