Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq117806 114 1e-20 seq4302 102 8e-17 seq72254 93.3 4e-14 seq149362 89.7 5e-13 seq210190 86.0 6e-12 seq161123 84.2 2e-11 seq25063 84.2 2e-11 >seq117806 Length=5035 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || ||||||||| || || |||| Sbjct 3658 GACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 3599 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || ||||| ||||| ||| || || | Sbjct 3598 AAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACG 3539 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||||| || | || || || || || ||||| Sbjct 3538 TTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCTTCCCCGTTAGGGTTTTC 3479 Query 138601 ACAAAAATCTGCATGG 138616 || || |||||||||| Sbjct 3478 ACGAAGATCTGCATGG 3463 >seq4302 Length=1545 Score = 102 bits (112), Expect = 8e-17 Identities = 147/207 (71%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 52346 GGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGCATGGT 52405 ||| |||||||| |||| |||||||| || | | | || | || ||||| || || Sbjct 1545 GGCGCAGTGGGCCCTGAAATGGATCGA---CGGCTCGGAGACTTTCGCGGAGCGGATCGT 1489 Query 52406 GGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACAT 52465 |||||||||| || ||||| | || || || || ||||| ||| || |||| | Sbjct 1488 GGCCTTCGCCTGCGTGGAGGGGATCTTCTTCTCGGGAAGCTTCTGCGCGATATTTTGGCT 1429 Query 52466 TAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGA 52525 |||| | || | ||||| || ||||| ||| ||||||||||| ||||| || || Sbjct 1428 AAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCGCGAGATGA 1369 Query 52526 AGGACTGCACACGGACTTTGCGTGCCT 52552 ||| || ||| ||||| |||||||| Sbjct 1368 AGGCCTCCACTGCGACTTCGCGTGCCT 1342 >seq72254 Length=390 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || ||||| | | | |||||||| || || ||||| || Sbjct 52 CCACCACGCAGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAGCA 111 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || || | | |||| |||||||| |||||||| || Sbjct 112 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGG 171 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | |||| |||| | | |||||| | ||||||| Sbjct 172 ATTCCCTCCTTGTCC-TGAATCTTGGCCTTAACGTTGT-CAATGGTGTCAGAAGACTCCA 229 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || || ||||| || ||||| ||||| Sbjct 230 CCTCAAGGGTGATAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 278 >seq149362 Length=6446 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || | ||| || || | | |||| |||||||||||||||||||| Sbjct 1970 CCACCACGCAGTCGGAGAACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGCA 1911 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | |||||| | |||||||| | | |||| || | ||| || || || || Sbjct 1910 AGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGA 1851 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | |||| || | || |||| ||||| Sbjct 1850 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTG-TCAATTGTATCGGAGCTTTCCAC 1792 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||| || || |||||||| |||||||| Sbjct 1791 CTCCAGGGTGATTGTCTTCCCAGTAAGCGTCTTTACAAAGATCTGCAT 1744 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | ||| || || | | | || |||||||||||||||||||| Sbjct 2198 CCACCACGCAGACGGAGAACCAAGTGCAAGGTAGATTCCTTTTGAATGTTGTAGTCTGCA 2139 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||| || | |||||||| | | |||| || | ||| || || || || Sbjct 2138 AGAGTTCTTCCGTCTTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGG 2079 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||||||| || | |||| || | || || | ||||| Sbjct 2078 ATACCCTCCTTGTCCTGGATTTTTGCCTTGACATTG-TCAATTGTATCAGAGCTTTCCAC 2020 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || || || |||||||| |||||||| Sbjct 2019 CTCCAAGGTGATTGTCTTCCCTGTAAGCGTCTTTACAAAGATCTGCAT 1972 >seq210190 Length=6381 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || |||||||| | || | ||||||||| || || |||| | Sbjct 2953 GACTCCTTCTGGATATTGTAGTCAGCGAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCA 2894 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | |||||| || ||||| || || || ||||| ||| || ||| | Sbjct 2893 AAGATGAGCCTCTGTTGATCTGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACG 2834 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||| || | || || || || || || || Sbjct 2833 TTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGACGGTCTTGCCGGTTAGGGTCTTC 2774 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 2773 ACAAAGATCTGCATG 2759 >seq161123 Length=4290 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | ||| || || | |||| |||||||||||||||||||| Sbjct 2552 CCACCACGCAGACGGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCCGCA 2611 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | |||||| | |||||||| | | |||| || | ||| || || || || Sbjct 2612 AGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGA 2671 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| ||| ||| | |||| || | || || | ||||| Sbjct 2672 ATACCCTCCTTGTCCTGGATCTTTGCTTTAACATTG-TCAATTGTATCAGAGCTTTCCAC 2730 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||| || || || ||||| || ||||| Sbjct 2731 CTCCAATGTGATTGTCTTCCCAGTAAGGGTCTTCACAAAGATTTGCAT 2778 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCG 138477 |||||||||||||||||||||| || ||| | ||| || || || || || ||||| Sbjct 2127 TTGACTCCTTTTGAATGTTGTAATCTGCT-AGAGTCCGGCCATCTTCAAGCTGCTTACCA 2185 Query 138478 GAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTT 138536 | | | || || | ||| ||||||||||| || || || ||||| ||| | |||| ||| Sbjct 2186 GCAAATATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTC-CTGAATCTTTGCTTT 2244 Query 138537 TAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | | || | || || | ||| ||||| | || | || || ||||| || || Sbjct 2245 CACATTATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAGTGAGGGT 2304 Query 138597 TTTTACAAAAATCTGCAT 138614 || ||||| |||||||| Sbjct 2305 CTTCACAAAGATCTGCAT 2322 >seq25063 Length=710 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | | || ||||| || ||||||||||| | Sbjct 142 CCACCACGAAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCC 201 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| || || || |||| | |||| || | ||| ||||| || || Sbjct 202 AGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 261 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | |||| || | |||||| | |||||| Sbjct 262 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACATTG-TCAATGGTGTCTGAGCTCTCCAC 320 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || |||| || || ||||| |||||||| Sbjct 321 CTCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494928545921280