Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq149362 109 4e-19 seq16096 107 1e-18 seq210616 98.7 7e-16 seq161123 98.7 7e-16 >seq149362 Length=6446 Score = 109 bits (120), Expect = 4e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || ||||| ||||||||||| ||| | ||| | ||||| | || Sbjct 2630 TGAAGGGTCGACTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTCCCATCTTCAAGCTGC 2571 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 || ||||| |||| | | ||| ||||| ||||| ||||||||||| ||| ||| Sbjct 2570 TTACCAGCAAATATGAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGAATCTTT 2511 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| ||| | || || ||||| | | ||||| || ||||| ||||| || || || Sbjct 2510 GC-TTTCACATTATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAGT 2452 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| Sbjct 2451 AAGTGTCTTCACAAAGATCTGCAT 2428 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| || || || ||||| || ||||||||||| || | || |||| || Sbjct 2408 ACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCCAGTGTCCTGCCGTCCTCA 2349 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || || || | || | | ||| ||||| ||||| ||||| ||||| | Sbjct 2348 AGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGA 2289 Query 15088 AT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||||| || || | || || || || |||| || || || ||||||||||| Sbjct 2288 ATCTTTGCCTTG-ACGTTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATGGTTTT 2230 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| ||| || |||||||||||||| Sbjct 2229 CCCGGTCAAAGTCTTCACAAAAATTTGCAT 2200 >seq16096 Length=889 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || || ||||||||||| ||| | ||| | || || | || Sbjct 797 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCAAGCTGC 738 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| |||| | | ||| ||||| || || || ||||| || ||| ||| Sbjct 737 TTTCCAGCGAATATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGAATCTTG 678 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || ||||| | | ||||| || || || ||||| || |||||| Sbjct 677 GCTTTCACATTGTCAATCGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTCCCTGTC 618 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 |||||||| ||||| || |||||| Sbjct 617 AGAGTTTTGACAAAGATCTGCATA 594 >seq210616 Length=3554 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || | ||||||||||| ||| | ||| | || || | || Sbjct 3141 TGAAGGGTGGACTCCTTCTAAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCGAGCTGC 3200 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| |||| | | || | ||| || || || ||||||||| ||| || Sbjct 3201 TTTCCAGCGAATATGAGCCTTTGCTTGTCCGGAGGGATGCCCTCCTTGTCATGAATCTTA 3260 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || ||||| | | ||||| || || || ||||| || |||||| Sbjct 3261 GCTTTCACATTGTCAATTGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTTCCTGTC 3320 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 | |||||| ||||| ||||||||| Sbjct 3321 AAAGTTTTGACAAAGATTTGCATA 3344 >seq161123 Length=4290 Score = 98.7 bits (108), Expect = 7e-16 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||||| || || ||||| ||||||||||| ||| ||| | | | ||||| | || Sbjct 2120 TGAAGGGTTGACTCCTTTTGAATGTTGTAATCTGCT-AGAGTCCGGCCATCTTCAAGCTG 2178 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091 || ||||| |||| | | ||| ||||| ||||| || |||||||| ||| || Sbjct 2179 CTTACCAGCAAATATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTT 2238 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 ||| ||| ||| | || || ||||| | | ||||| || ||||| ||||| || || | Sbjct 2239 TGC-TTTCACATTATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAG 2297 Query 15152 TCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || ||||| || ||||| Sbjct 2298 TGAGGGTCTTCACAAAGATCTGCAT 2322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356455416737840