Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_011611.1 Length=36885 Score E Sequences producing significant alignments: (Bits) Value seq7292 159 8e-35 seq118405 96.9 8e-16 >seq7292 Length=1256 Score = 159 bits (176), Expect = 8e-35 Identities = 370/552 (67%), Gaps = 12/552 (2%) Strand=Plus/Plus Query 17175 GGCTGATCTGCGGGCCATCTTCGCCCTGCGGCCGGCCGCCGCTATCGAGTACCTGGAGCG 17234 ||| ||||| || ||||||| |||| || |||||||| |||| ||||| || | Sbjct 302 GGCCGATCTCAAAGCGATCTTCGGCCTGGATCCAGCCGCCGCCATCGCCTACCTCAAGGG 361 Query 17235 AAAGGGATTCGCCATCACTTGGAACTGGCATGACGTTGACGCGGCCACCCACGCCCGCGC 17294 || || | || | || ||| | ||||| ||| | || || |||||| || || Sbjct 362 CAAAGGCTATGCGGTTACCTGGGATTGGCAGGACATGCTCGATGCGGCCCACGACCAAGC 421 Query 17295 TCTGACCGTTGCCAGAGCAGCACGCCTGGACGTGCTCCAGGACATTCGCGACGCCCTGGT 17354 | |||||||||| || |||||||| ||||| |||||| ||||| | ||| Sbjct 422 GTTCACCGTTGCCAAGGCCATGCGCCTGGATCTGCTCTCGGACATCCGCGAATCATTGGA 481 Query 17355 CGAGAACC-TGGAGCGCGGCGAGACGCTTCGAGACTTCAAGCGCAACCTGCGGCCGACCC 17413 ||| || || || ||| |||| || | | |||| | |||| ||| || Sbjct 482 -GAGCGCCCTGCAGGAAGGCAAGACCCTGCAGCAGTTCACCAAGGAACTGCAGCCTGTCC 540 Query 17414 TGGAGGCGAAAGGCTGGTGGGGTCGCCAGGTGGTAGTCGC--GCCGGATGGCGGCGCCGA 17471 ||||| |||| |||||||| ||||| | |||| ||| | ||| || || Sbjct 541 TGGAGCAACAAGGTTGGTGGGGCAAGCAGGTCCTGGTCGACAGCCAG--GGCAATGCGGA 598 Query 17472 GGTTGCACAACTGGGCAGCCCGCGCCGCCTGGATACCATCTACCAGACCAACATGCAGTC 17531 | | | || ||||| ||||| ||||| || | || ||||||||||||||| ||||| Sbjct 599 GATGGTCCAGCTGGGTAGCCCACGCCGGCTTAAGACGATCTACCAGACCAACCTGCAGAG 658 Query 17532 GGCCTACATGGCAGGGCGCTACGCGGCCGCCTACGAAGCCAGGG---AAACCCACCCTTA 17588 ||||| ||||| || ||| | | |||| || | || || | ||||| || || Sbjct 659 CGCCTATATGGCCGGTCGCAAATC---CGCCATGGAGGACACGGTCGAGACCCATCCGTA 715 Query 17589 CTGGATGTATGTGGCGGTGATGGATGGCGTTACCCGGCCCAGCCATGCCGCCCTGCATGG 17648 ||||| || | ||||||||||||||| ||||| || |||||||| || || | || Sbjct 716 CTGGAGCTACATCGCGGTGATGGATGGCAAGACCCGACCTAGCCATGCTGCGCTCAACGG 775 Query 17649 GAAAGTGTTCAGGTGGGACGATCCGATCTGGCAGCACATCACCCCGCCCAATGGCTACAA 17708 |||| | | ||||| ||||||||| |||| ||||||||| || | || Sbjct 776 TGTGGTGTACCGACATGACGACCCGATCTGGTCCACCATCTTCCCGCCCAACGGGTTTAA 835 Query 17709 CTGCCGGTGCCG 17720 |||||| ||||| Sbjct 836 CTGCCGCTGCCG 847 >seq118405 Length=3401 Score = 96.9 bits (106), Expect = 8e-16 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24798 AGTGCACAGAGCGCCGAGGCGGCCCTGGTCCAGTTTGGCCAGGCTCTGGCGTCGGGCGTT 24857 |||||| || || || || || |||| ||||| || || ||| |||| || || || Sbjct 1393 AGTGCAGCTAGTGCAGAAGCTGCTTTGGTGCAGTTCGGTCAAGCTTTGGCTTCAGGTGTG 1452 Query 24858 CTGCGCGGCGAGGAATTCAACTCGGTCAGCGAGCAGGCGCCCGCGCTGCTGAAAGCAATT 24917 || ||||| || ||||| || || | ||||| || || | | | |||||||| Sbjct 1453 CTTCGCGGTGAAGAATTTAATTCAATTTCAGAGCAAGCACCGGGTTTATTAAAAGCAATC 1512 Query 24918 GCCGATGGCCTCAACGTCAATATCGGCGAGCTTCGCAAGATGGCGAACGAAGGCCAGTTG 24977 ||| ||| | ||||||||||| ||||| ||||| || ||||| || ||||| || ||| Sbjct 1513 GCCACAGGCTTAAACGTCAATATTGGCGAACTTCGTAAAATGGCAAATGAAGGTCAATTG 1572 Query 24978 ACGGCTGACGT 24988 | ||||| || Sbjct 1573 TCTGCTGATGT 1583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117609326405536