Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_011802.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq155237 91.5 4e-14 >seq155237 Length=1413 Score = 91.5 bits (100), Expect = 4e-14 Identities = 269/410 (66%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 1688 TAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAAGTTATTCCCTCCAGCGCCAGGTTC 1747 || ||||| | | |||||| | || ||| || || | || |||| ||||| ||| Sbjct 408 TAGGTCCACAGCCTGAGCGGCACGGTACTGAAGGAGGTGAAGCCTTCCAAGGCCAGATTC 349 Query 1748 CATAATTTCCAGCCGTTGAATTTCGAATCACCGGCCACGCGTTCGGCACGGGCATATTTA 1807 || | |||||||||||||| || ||||| |||| |||||| | || | Sbjct 348 CACAGCTTCCAGCCGTTGAACTTGCTGCTGCCGGCGCTGCGTGGGGCACGCTCGTACTCG 289 Query 1808 ACAACATCCGTTTTTC--CGCCAACCCAACTGAGCACACCCTTCATAAACAAGTTGCGTT 1865 || || ||| | || ||| ||||| ||| | |||||||| |||| |||||| | Sbjct 288 AC--CACCCGGGTGTCGAAGCCGACCCAGGAGAGGATGCCCTTCATGAACAGGTTGCGCT 231 Query 1866 CTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCTCATTAACCGAAAGTCGCCAACAT 1925 | |||| | |||||| || || ||| | || ||||| | ||| || || || || | Sbjct 230 CGGGCAGGTCCTTGATGGCATCCACCACCTCGCGACTCATCAGCCGGAAATCACCGACGT 171 Query 1926 TTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAGCTTATAAAACCACTCAGCTGTCT 1985 | |||||||| | | | ||| ||||||||| || || | ||| || ||| Sbjct 170 TCTCTTCGATGGGGGTCTGGGCGATGCGATTGTGCAGGCGGTAGAAGCCCTCGGCGGTCA 111 Query 1986 TACGCTTCAACCTCCCATCAGTTGAG-CGGTCTGAGCGCTTAGCCAGCACCATATCCGCG 2044 ||||| | | | || | || | ||||| |||||| ||||| |||| || ||| Sbjct 110 GCCGCTTGAGCGGGCTGTC-GCTGCGCCGGTCGACGCGCTTGGCCAGTACCACGTCGGCG 52 Query 2045 CCAGCCTGCCACTTCTCAATGAGATGAGGGATAACTTCTATCGGATCCTG 2094 || | |||||| ||| | || | ||||| || || | ||| ||||| Sbjct 51 CCCTGCCGCCACTGCTCGAGCAGCCGCGGGATGACGTCCAGCGGGTCCTG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133747214274464