Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq37850 116 3e-21 seq134381 113 4e-20 seq210190 107 2e-18 seq29583 105 6e-18 seq72254 96.9 3e-15 seq16096 95.1 1e-14 seq161123 93.3 4e-14 seq117806 93.3 4e-14 seq20564 93.3 4e-14 seq149362 87.8 2e-12 seq204338 84.2 2e-11 >seq37850 Length=568 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || ||||| | ||| | |||||| || || ||||| |||||||| ||||| Sbjct 104 ATCCCACCACGAAGCCTGAGCACCAAATGCAGAGTCGACTCCTTCTGGATATTGTAATCC 163 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| |||||||| || || ||| | ||||| | ||||| ||||| Sbjct 164 GCAAGAGTCCTGCCATCCTCCAATTGCTTACCAGCGAAGATCAACCTCTGCTGATCCGGT 223 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| ||||| || || || |||| || | || | |||||||| ||| Sbjct 224 GGGATCCCTTCCTTATCCTGGATCTTGGCCTTGA-CGTTATCAATCGTGTCGGAGCTCTC 282 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||| | || || ||||| ||||| || || || |||||||| Sbjct 283 AACTTCGAGAGTGATTGTCTTCCCGGTGAGAGTCTTCACGAAGATTTGCAT 333 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | ||| | ||| || || || ||||| |||||||| |||||| Sbjct 332 ATACCACCGCGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCG 391 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| ||||| || || || ||| | ||||| | ||||||||||| Sbjct 392 GCCAAAGTTCGGCCATCCTCCAACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGG 451 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || || || || |||| || | || | ||| || || ||| Sbjct 452 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTATCAGAGCTCTC 510 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| |||||||| | ||| || |||||||| ||||| || || || ||||| Sbjct 511 GACCTCGAGAGTGATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 561 >seq134381 Length=6558 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | || || || ||||| || || || || ||||||||||||||| Sbjct 3880 CCACCACGGAGACGCAGAACAAGGTGCAGAGTGGACTCTTTCTGGATATTATAATCGGCC 3939 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| ||||| || ||||| ||| | ||||| | |||||| |||||||| Sbjct 3940 AAAGTACGACCATCCTCCAACTGCTTTCCGGCGAAGATCAACCTTTGCTGATCCGGCGGG 3999 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || ||||||||||| || ||||| || | ||| || || ||| || Sbjct 4000 ATACCCTCCTTATCTTGAATCTTGGCTTTGACATTGTCAATGGTATCAGAGCTCTCTACC 4059 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || ||||| || | ||| || ||||||| ||||| Sbjct 4060 TCGAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAACCTGCAT 4106 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || ||||| | ||| || || || || || ||||| |||||||| || || Sbjct 4105 ATGCCACCACGAAGCCTGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCT 4164 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | || ||||| || | || | | || ||||| || Sbjct 4165 GCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGTTGGTCTGGA 4224 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || || || || |||||| || | ||||||||| ||| Sbjct 4225 GGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGATGTTGTCGATGGTGTCGGAGTTCTCT 4284 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || ||||||||||| || |||||||| || ||||| Sbjct 4285 ACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTCTTTACAAAGATCTGCAT 4334 >seq210190 Length=6381 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || ||||| || || ||||| ||||||||||||||| Sbjct 3214 CCACCACGGAGACGAAGAACAAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCGGCC 3155 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| ||||| || ||||| ||| | ||||| | |||||| |||||||| Sbjct 3154 AAAGTACGACCATCCTCCAACTGCTTTCCGGCGAAGATCAACCTTTGCTGATCCGGCGGG 3095 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || |||||||||| || ||||| || | ||| || || ||| || Sbjct 3094 ATACCCTCCTTATCTTGAACCTTGGCTTTGACATTGTCAATGGTATCAGAGCTCTCCACC 3035 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || ||||| || | ||| || |||||||| ||||| Sbjct 3034 TCCAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATCTGCAT 2988 >seq29583 Length=650 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| || | ||| || || || || ||||||||||| ||||| || || Sbjct 493 ATGCCACCGCGGAGTCTGAGCACCAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCA 434 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || ||||| || | |||| || ||||||||| || Sbjct 433 GCAAGGGTGCGTCCATCCTCGAGCTGCTTTCCAGCAAAAATCAGTCTTTGCTGGTCTGGG 374 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| |||||||| ||||| ||||| || | |||||| || || Sbjct 373 GGAATGCCTTCCTTATCTTGGATTTTGGCTTTGACATTGTCGATGGTGTCAGAGCTTTCA 314 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | || ||||| || ||||| || || || || |||||| Sbjct 313 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCATC 263 >seq72254 Length=390 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | ||| || || || ||||| |||||||| ||||| | |||| ||| || Sbjct 69 CACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAGCAAGGGTTCGGCCATCCTC 128 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || || | |||| || ||||||||||| || || || || || || || Sbjct 129 AAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTG 188 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||| || || | || | || | |||||| |||||||| || || || || | || | Sbjct 189 AATCTTGGCCTTAA-CGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCT 247 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||||| || ||||| || |||||||||||| Sbjct 248 TGCCGGTGAGGGTTTTCACGAAAATTTGCATC 279 >seq16096 Length=889 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | ||| | ||||| || || |||||||| |||||||| || Sbjct 596 ATACCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCT 537 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || || ||||| | ||||| | |||||||| || Sbjct 536 GCAAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGG 477 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || ||||| |||||||| ||| | || | |||||| || || Sbjct 476 GGAATACCCTCCTTATCCTGAATTTTAGCTTTCACATTATCAATGGTGTCAGAGCTTTCC 417 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | ||||||||||| || || || ||||| |||||||| Sbjct 416 ACTTCCAAAGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 367 >seq161123 Length=4290 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTT--TAGAATCG 45188 ||| | |||||| ||||| ||||| || || || ||||| || | || | || ||| Sbjct 2341 CACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATC--TGCCAGTGTCCTACCATCC 2398 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || | || |||||||| | || | | |||||||| || |||||||||||||| || Sbjct 2399 TCGAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 2458 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 |||||||| |||| || | ||||| || || ||||| | ||||| ||| Sbjct 2459 TGAATTTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATAGTT 2518 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||| || ||||| |||||||| Sbjct 2519 TTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 2550 >seq117806 Length=5035 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | ||| || || || || || ||||| ||||| || || ||| | Sbjct 3691 CCACCGCGGAGGCGGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCG 3632 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | || || || ||| | || | || |||||||||||||| Sbjct 3631 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 3572 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 |||||||| || || || || || |||| || | || | ||||||||| ||||| || Sbjct 3571 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCCAC 3513 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || || || ||||| ||||| || || || ||||| Sbjct 3512 CTCGAGGGTGATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 3465 >seq20564 Length=789 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| | | ||||||||| || || || ||||| || ||||||||||||||||| Sbjct 515 TTCCTCCCCTCAACCTCAACACAAGGTGGAGAGTTGACTCTTTTTGGATATTATAATCTG 574 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | |||| | ||| ||||| || || || || | |||| || ||||| || || | Sbjct 575 CAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGCTGATCTGGAG 634 Query 45232 GAATGCCTTCTTTATCTTGAA 45252 | |||||||| ||||| |||| Sbjct 635 GGATGCCTTCCTTATCCTGAA 655 >seq149362 Length=6446 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTT--TAGAATCG 45188 ||| | |||||| || || || || || || || ||||| || | || | | || Sbjct 2409 CACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATC--TGCCAGTGTCCTGCCGTCC 2352 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || | || |||||||| | || | | |||||||| || |||||||||||||| || Sbjct 2351 TCAAGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 2292 Query 45249 TGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 ||||| ||| |||| || | || | ||||| || || ||||| | ||||| || Sbjct 2291 TGAATCTTTGCCTTGA-CGTTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATGGT 2233 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| | ||| || |||||||||||||| Sbjct 2232 TTTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 2200 >seq204338 Length=3429 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 |||| || | ||||| || ||||| || || ||||| ||||||||||| | |||||| Sbjct 3061 TTCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTCATAATCTG 3002 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | ||| | ||| |||||||| || || || | ||||||| || || || || | Sbjct 3001 CAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGAG 2942 Query 45232 GAATGCCTTCTTTATCTTGAA 45252 | |||||||| ||||| |||| Sbjct 2941 GGATGCCTTCCTTATCCTGAA 2921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450788305799040