Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq21788 111 4e-20 seq118902 100 7e-17 seq76096 84.2 6e-12 >seq21788 Length=766 Score = 111 bits (122), Expect = 4e-20 Identities = 157/216 (73%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 32572 GTGTCGGCCCAGCGCTTCGCGGTGGTTGACCCGAACAACGGCGGCGCTTCGATCGTGCCG 32631 || ||||| | | |||||||||||| || | |||||| ||||| ||| ||| Sbjct 510 GTATCGGCAGACCTCTTCGCGGTGGTCAACGGCATCAACGGTA-CGCTTTCCTCG--CCG 566 Query 32632 TTCGTGGTGCAGGGCGGGCAGGTGTTCTTGCGCCAGGCGCTCATCGGTTCCGGCTGGATC 32691 |||| || |||||||||||||||||| || |||| ||||| |||| || Sbjct 567 TTCGCAGTTCAGGGCGGGCAGGTGTTCATGAATGAGGCCTTCATCCAAGACGGCACCATT 626 Query 32692 ACGAACGCGATGATCGGCAGCTACATCCAGTCCGA-CAACTACATCGCGGGCCGGCAGGG 32750 |||||||| | ||| ||||||||||| ||| ||| ||||||| |||| |||| || || Sbjct 627 ACGAACGCCAAGATAGGCAGCTACAT-CAGCTCGACCAACTACGTCGCCGGCCAACAAGG 685 Query 32751 CTGGCGGCTCGACAAGAGCGGATGGTTCGAGATCAA 32786 |||| | |||||||||| |||||||||||| Sbjct 686 CTGGATCTTGAACAAGAGCGGCACGTTCGAGATCAA 721 >seq118902 Length=7414 Score = 100 bits (110), Expect = 7e-17 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 8939 GCCCAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATG 8998 |||||||||| || || || ||||| || | || || |||||||| ||||||||||||| Sbjct 7414 GCCCAAACAAACGTCCAGTAATGTCAGACTTACGTGAATCGGGTGCAATCGAGCAGGATG 7355 Query 8999 CCGACGTGATCCTCTTTATCTACCGCGATGAGGTCTATAACCCCGACAGCGCAGATCGCG 9058 |||| | || | ||||| ||||| ||||| || |||||| || ||| | Sbjct 7354 CCGATTTAATTATGTTTATTTACCGTGATGAAGTTTATAACAAAGAATCTAAAGAAGCAG 7295 Query 9059 GTACGGCCGAAATCATCATTGCGAAGCAGCGAAACGGGCCGATTGGCACCGTACG 9113 |||| || ||||| || || | || ||||| ||||| || ||||| | ||| || Sbjct 7294 GTACAGCAGAAATTATTATCGGTAAACAGCGTAACGGTCCAATTGGTAGCGTTCG 7240 >seq76096 Length=379 Score = 84.2 bits (92), Expect = 6e-12 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27088 GCCGTGGCCGATCCAGGCGGCCGGTTTCGAGCGGACGTCGG--ATGCGCGGCAGCCTGCG 27145 ||||||||| || |||| | || ||||| ||| ||| | | | |||||| | Sbjct 10 GCCGTGGCCAATAGAGGCCGAAGGCTTCGAAATGAC--CGGTCAGGGCCAACAGCCTTCC 67 Query 27146 CCCACGCTGACGGTCGGCGACATCAACGGCACGATCACGGCGCTGTGCGTTGCGCT-CGA 27204 |||||||||| || ||| || || |||| ||||| |||||| | | | || ||| Sbjct 68 CCCACGCTGAGCGTGGGCAACGTCGACGGTTTTATCACCGCGCTG-GTGATCTACTTCGA 126 Query 27205 TGATCTCGTCGGCGCGAAGGTGTTCCGCCGGCGCACGCTGGCGAAGTACCTCGACGCGGT 27264 || || ||||| |||||| || |||| ||||||||| || || || |||||||| Sbjct 127 CGACCTGGTCGGGGCGAAGCTGACTCGCCACCGCACGCTGACGCGATATCTGGACGCGGT 186 Query 27265 GAATTTTCCGAATGGCAACCCGACCGCGGACCCGAACGAGCAGTGGCCGCC 27315 ||| ||||| |||||||| || ||||| |||| ||| ||||| Sbjct 187 GAACTTTCCCGGCGGCAACCCTGAGGCAGACCCTGACGAAGAGTTTCCGCC 237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127219923789504