Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4302 102 1e-16 >seq4302 Length=1545 Score = 102 bits (112), Expect = 1e-16 Identities = 299/453 (66%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| ||||| || | |||||| ||||| || |||||||| | || || || |||||| Sbjct 1059 GTACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTAATCAGCTCCAT 1118 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGC---ACCCCAATCTGTTTGAGGAG 127347 ||||||||||||||| | || | ||| | | ||||| | || || Sbjct 1119 CCAATCAAATGGGTTCTGCACAT--CATACAGTTTCCCATATCCCAA-CGCACCCAGCAG 1175 Query 127348 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT 127407 | ||| | |||| |||| ||||||| | |||| ||| |||||| || | | | Sbjct 1176 CCTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGC 1235 Query 127408 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGC 127467 || || | |||||| ||| |||| || |||| ||||| || || | ||| ||||| | Sbjct 1236 GCACGGTAACGCGTCGCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCGCACGATTGA 1295 Query 127468 GTGAATAGTGTCCACCCC-AGGTCTATT--GCGTAAAGTCTTGAAGAGTTCCACAGCAAA 127524 | | ||| | || | || | | | | | || || ||| || || Sbjct 1296 CTTCACGCGCTCCTCGGTGAGCTTCATCCGGAGGAGGGAGTAGAGAAGG--CAC-GCGAA 1352 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || |||||| || || || || ||||| | || ||||||||| |||||| ||||| Sbjct 1353 GTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCAT 1412 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 | || ||||| || | ||| || ||||| || || || ||||||||||||||||| Sbjct 1413 CAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGATCCCCTC 1472 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAA 127677 ||| || ||||| || | | ||||| || || Sbjct 1473 CACGCAGGCGAAGGCCACGATCCGCTCCGCGAA 1505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611858215347840