Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4302 131 3e-25 >seq4302 Length=1545 Score = 131 bits (144), Expect = 3e-25 Identities = 301/442 (68%), Gaps = 11/442 (2%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGAT-TCCATGAACCCGAATGGG 159706 ||||||| || || |||||||| |||| | | || | | ||||| | | |||||| Sbjct 1073 TCTTCTCAAAGAAATTGGTCTTCCCCTGAA-GACTAATCAGCTCCATCCAATCAAATGGG 1131 Query 159707 TTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAAT 159766 |||| ||| | ||| | ||| | |||| | || |||||| ||| || || || || Sbjct 1132 TTCTGCACATCATACAGTTTCCCATATCCCAACGCACCCAGCAGCCTATCAGCGACGAAC 1191 Query 159767 TCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA-GCCTAACGGGGAGCGCTTC 159825 |||||||| || |||| | |||| ||| ||||| | | | | |||| | ||| || Sbjct 1192 TCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGCGCACGGTAA-CGCGTC 1250 Query 159826 CGACAGAAACTCCTTCTCAATCTCGACCGC-TTCGGTCACAATCTGCGAGACACGTTCGT 159884 | | |||||| |||| || || ||||| ||| | ||| || | || || || | Sbjct 1251 GCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCG-CACGATTGACTTCACGCGCTCCT 1309 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 |||| | | | || | | || |||||||| ||||||||||| || | Sbjct 1310 CGGTGAGCTTCATCCGGAGGAGGGAGT---AGAGAAGGCACGCGAAGTCGCAGTGGAGGC 1366 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 | || || || ||||| |||||||| || | | | || |||||||| | ||| ||| || Sbjct 1367 CTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATCAACCCGCGCTTTT 1426 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 | |||||||| || | |||| |||| | | | || ||||||||||||||| || || Sbjct 1427 TTAGCCAAAATATCG-CGCAGAAGCTTCCCGAGAAGAAGATCCCCTCCACGCAGGCGAAG 1485 Query 160064 GCCACGAGCCTCTCACCAAAAG 160085 ||||||| || ||| | |||| Sbjct 1486 GCCACGATCCGCTCCGCGAAAG 1507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793017981853440