Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4302 98.7 1e-15 seq144477 89.7 6e-13 >seq4302 Length=1545 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 || || ||||| || | || || || || || ||||| ||||||||||| || |||| Sbjct 1505 TTCGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAGGGGATCTTCTTCTCGGGAAGCTTC 1446 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 ||||| || | |||||| || ||||| || | ||||| ||||| |||||| |||||| Sbjct 1445 TGCGCGATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAG 1386 Query 102294 CTTATCTCTCGTGACGAGGGACTCCAC 102320 | ||||| || || || || |||||| Sbjct 1385 TTGATCTCGCGAGATGAAGGCCTCCAC 1359 >seq144477 Length=2901 Score = 89.7 bits (98), Expect = 6e-13 Identities = 246/373 (66%), Gaps = 8/373 (2%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| || |||||||| ||||| | ||| |||||||| || |||| |||||||| | Sbjct 1044 AAACCCGTCCATCTCCGTCAACAACTGATTAATAGTCTGCTCCCTCTCATCATTTCCA-- 987 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| || || | | ||| | || || ||||||||||||||||| || || ||| Sbjct 986 CCTCCCATCCCCGCCCCTCTCTGCCTCCCAACCGCATCAATCTCATCAATAAACACAATG 927 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 || || ||||| | || ||||| | |||| || | | || ||||| | Sbjct 926 CAGGG--CGCTTTCGACTTGGCCTTCTCAAACAAGTCCCTCACTCTCGACGCTCCCACTC 869 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 | ||||||| ||||||||| | | || | || || ||| || || |||| Sbjct 868 CCACAAACAGCTCCACAAACTCCGACGCCGCGCAGGAGAAGAACGGCGTGCCAGCCTCAC 809 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269 | |||| || || || || || ||||| || ||||| || ||| | || || | Sbjct 808 CAGCAACCGCACGCGCCAGCAGGGTCTTTCCGGTACCGGGAGGGCCCACAAGCAGACACC 749 Query 16270 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329 || |||||||| || || || ||| | ||||| | ||| | |||||||||| Sbjct 748 CTTTGGGAATCTTAGCTCCCAAGGCAGTGTACTTATCAGGATTCTTCAAGAAATCCACAA 689 Query 16330 TCTCTTCCAATTC 16342 ||| | ||| || Sbjct 688 CCTCCTGCAACTC 676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619073968577280