Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq144477 89.7 6e-13 seq4302 87.8 2e-12 >seq144477 Length=2901 Score = 89.7 bits (98), Expect = 6e-13 Identities = 248/373 (66%), Gaps = 8/373 (2%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| || |||||||| ||||| | || |||||||| || |||| |||||||| | Sbjct 1044 AAACCCGTCCATCTCCGTCAACAACTGATTAATAGTCTGCTCCCTCTCATCATTTCCA-- 987 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| || || | | ||| | || || ||||||||||||||||| || ||||| Sbjct 986 CCTCCCATCCCCGCCCCTCTCTGCCTCCCAACCGCATCAATCTCATCAATAAACACAATG 927 Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || | ||| | ||| | ||||| | || | || || || ||||| || Sbjct 926 CA-GGGCGCTTTCGACTTGGCCTTCTCAAACAAGTCCCTCACTCTCGACGCTCCCACTCC 868 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 ||||||| ||||||||| | | || | || || ||| || || ||||| Sbjct 867 CACAAACAGCTCCACAAACTCCGACGCCGCGCAGGAGAAGAACGGCGTGCCAGCCTCACC 808 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 |||| || || || || || ||||| || ||||| || ||| | || | | |||| Sbjct 807 AGCAACCGCACGCGCCAGCAGGGTCTTTCCGGTACCGGGAGGGCCCACAAGCA-GACACC 749 Query 9578 CCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAA 9636 | | |||||||| || || || ||| | ||||| | ||| | |||||||||| Sbjct 748 CTTTGGGAATCTTAGCTCCCAAGGCAGTGTACTTATCAGGATTCTTCAAGAAATCCACAA 689 Query 9637 TCTCTTCCAATTC 9649 ||| | ||| || Sbjct 688 CCTCCTGCAACTC 676 >seq4302 Length=1545 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/192 (70%), Gaps = 7/192 (4%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| || |||||||| || || | || || |||||| || || ||||| | || Sbjct 1359 GTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATCAACCC 1418 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||| || | |||| | || |||||||| || ||||||||||| |||||||| || Sbjct 1419 GCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGATCCCCTCCACGCA 1478 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGG--AGCGAGACTTTGTGTCAAACCATTTCATT 117462 || || || | | ||||| ||||| | |||| | ||| | |||||||| Sbjct 1479 GGCGAAGGCCACGATCCGCTCCGCGAAAGTCTCCGAGCC-----GTCGATCCATTTCAGG 1533 Query 117463 GCCCATTTCGCC 117474 ||||| | |||| Sbjct 1534 GCCCACTGCGCC 1545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588395049605760