Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_015266.1 Length=40555 Score E Sequences producing significant alignments: (Bits) Value seq25629 122 2e-23 >seq25629 Length=702 Score = 122 bits (134), Expect = 2e-23 Identities = 349/518 (67%), Gaps = 28/518 (5%) Strand=Plus/Minus Query 23518 GTAGCGTTCGTACGCCTGGGCGAGCTTCGCGTCGTAGAGGTTGCGGGCATAGTCCGGGCC 23577 |||||| || | || | || ||||| ||||||||| |||||||| ||| | || || Sbjct 525 GTAGCGGGCGAAGGCGCGCGCCAGCTTGATGTCGTAGAGATTGCGGGCGTAGCCGGGCCC 466 Query 23578 GTTGTAGCCCTTCGCGAACGCGGCCCACTT-CCGGTTCTTTAGGGCGGACAGCAGCGACG 23636 ||||||||| ||||| | ||||| || || | | | | | |||||||| || Sbjct 465 GTTGTAGCCACGGGCGAAGTCCGCCCATTTGCCTGCGCGCAGGCTCTG-CAGCAGCG-CG 408 Query 23637 AGTCGGCCGCG-ACGAAGCGCACGAACCCGTCGAGCTGGTCGCCTTCGC---TCGTTTCC 23692 || || || | | |||||||||||| | || || || || | ||| |||| | Sbjct 407 GGTTGGGCGTGCAGGAAGCGCACGAAGGCCTCCAGGTGCGCGGCCGCGCCGCTCGT---C 351 Query 23693 ATCCGCGCGACGAACTCGTCGATGCTCGCGTAGCCGAGGCGCTTCCAGTGGTAGCCCATC 23752 ||||| || ||||| || | ||| |||||| | ||| || ||||||||||||||| Sbjct 350 ATCCGGGCAACGAAGTCCTGGATATCGGCGTAGTCCAGGGTCTGCCAGTGGTAGCCCATG 291 Query 23753 ACCTGGAACGCGCCCCAGCTCGCCGATTCGTAAGCCGACGCCGCGTGGA-TTCGCGCGGC 23811 | ||||||| ||||||||| ||||| || ||| | ||| || | ||| | | Sbjct 290 ATCTGGAACAGGCCCCAGCTGGCCGACTCCAGGGCCAGGTTCTCGTCGAGCTGGCGGGCC 231 Query 23812 AGTGTCGAGTCGCACGTATTCGGCGCTGCCGCCCT---GGTAGCCTCCCGGCTTCTGGTT 23868 || || ||| || ||| ||||| |||| | |||||| || || | | | || Sbjct 230 AGGGT-GAGCCGTTGCCATT---CGCTGGCGCCGTTACCGTAGCCACCGGGTTGCGGATT 175 Query 23869 GACGACGTTCG---AGAACAGGAGCGAGTAG-TGGACGGCGTCGTTCGCGCCGATGCTGT 23924 ||| | | | | || | || || || || | | | ||| | || |||| | | Sbjct 174 GACCAGGGTGGGATAGTCCTGG-GCCAGCAGCTCG--GCCGTGGCGCG-GCCGCGACGTT 119 Query 23925 CGACGA-GCTGCCGATACATAACATGCCGCTCGAACAGGATCACGGGCCGTCCGTCCGCC 23983 | || | || | || || | ||||| || ||||| |||||||| || || ||||| | Sbjct 118 CCACCAGGCGGGCG-TAGAAGACATGGCGTTCGAAGAGGATCACCGGGCGGCCGTCGTCG 60 Query 23984 AGGAAGCCCGAGCCGCGCGATTCGACTTCGGTGACAGC 24021 |||||||| |||||| |||||||| |||||||| || Sbjct 59 AGGAAGCCGCTGCCGCGGGATTCGACCTCGGTGACCGC 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129323339158496