Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq25629 122 2e-23 >seq25629 Length=702 Score = 122 bits (134), Expect = 2e-23 Identities = 334/497 (67%), Gaps = 30/497 (6%) Strand=Plus/Minus Query 19597 GCGAGCTTTGCGTCGTACAGATTGCGCGCGTAATCCGGGCCGTTGTAGCCCTTGGCGAAC 19656 || ||||| |||||| |||||||| ||||| | || ||||||||||| |||||| Sbjct 506 GCCAGCTTGATGTCGTAGAGATTGCGGGCGTAGCCGGGCCCGTTGTAGCCACGGGCGAAG 447 Query 19657 GCCGCCCACTT-CCTACCCTTCAGCGCGGAAAGCAAGGCCGTGTCGGCCGCG-ATAAACC 19714 ||||||| || ||| | | || | | | ||| || | || || || | | || | Sbjct 446 TCCGCCCATTTGCCTGCGCGCAGGCTCTGCA-GCAGCGCGG-GTTGGGCGTGCAGGAAGC 389 Query 19715 GCACGAACGCGTCGAGGTGATCGGCTTCGCTTCTCTGCATGCACGCGACGAAATCGGCGA 19774 ||||||| || || ||||| |||| ||| ||| ||| | || ||||| || || Sbjct 388 GCACGAAGGCCTCCAGGTGCGCGGCCGCGCCGCTCGTCATCCGGGCAACGAAGTCCTGGA 329 Query 19775 TGCTCGAATAGTCCAGGGCTTGCCAGTGATAGCCCATGATTTGAAACGCGCCCCAGCTCG 19834 | | |||||||||| |||||||| ||||||||||| || ||| ||||||||| | Sbjct 328 TATCGGCGTAGTCCAGGGTCTGCCAGTGGTAGCCCATGATCTGGAACAGGCCCCAGCTGG 269 Query 19835 CCGACTC--GTGCGAGGCGTCGGTGTCGATGCGCTCGGCCGTCGCGAGGCG--CACATAC 19890 ||||||| | || || || ||||| | |||| | ||| || ||| | Sbjct 268 CCGACTCCAGGGCCAG--GTTCTCGTCGAGCTGGCGGGCCAGGGTGAGCCGTTGCCATTC 211 Query 19891 TC-GGCGGCCTTGCCAGCATATCCGCCGGCGGTGCTCGAT--ACGATGTTCGGATA---C 19944 | |||| | || | | || || |||| | ||| ||| || | | | ||||| | Sbjct 210 GCTGGCGCCGTT---ACCGTAGCCACCGG-GTTGC-GGATTGACCAGGGTGGGATAGTCC 156 Query 19945 TTCGCCGCGAGCGCGTCGGCGTCGAGGCC------TTTCGCCTTGAGGCGCTTGTAGAAA 19998 | ||| ||| || | | | || |||| || | || ||||| |||||| Sbjct 155 TGGGCCAGCAGCTCGGCCGTGGCGCGGCCGCGACGTTCCACC---AGGCGGGCGTAGAAG 99 Query 19999 ACGTGCCGCTCGAAAAGGATCGCCGGCCGGCCGTCGACGATGAAACCCTCGCCGCGCGAT 20058 || || || ||||| |||||| |||| ||||||||| ||| ||| || |||||| ||| Sbjct 98 ACATGGCGTTCGAAGAGGATCACCGGGCGGCCGTCGTCGAGGAAGCCGCTGCCGCGGGAT 39 Query 20059 TCGACTTCATTGACCGC 20075 ||||| || ||||||| Sbjct 38 TCGACCTCGGTGACCGC 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103029051131552