Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq119091 118 1e-21 >seq119091 Length=4924 Score = 118 bits (130), Expect = 1e-21 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||||||| || ||| | ||| ||||||||| | || ||||| ||||||||||||||| Sbjct 1458 GATATTGTGGTGGGTTCTGCGCAGAGGTTTGGTGTGCCGATGGGGTATGGAGGTCCTCAT 1517 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG-- 153864 || || ||| | || ||| | | |||| ||||| | ||| ||||| |||||| | | Sbjct 1518 GCAGCTTTCCTGGCCACATCTCAGGAGTACAAGAGGATGATGCCTGGAAGAATTATTGGT 1577 Query 153865 GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924 || ||| || ||| | || || ||| | | || | ||||| || |||| Sbjct 1578 GTAAGT--GTTGATTCTTCGGGGAAGCCTGCACTGCGTATGGCCATGCAGACAAGGGAGC 1635 Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCAC 153975 | |||||||| || ||||| || ||||||||||| ||||| ||||||| || Sbjct 1636 AACATATCAGAAGGGACAAGGCTACCAGTAACATTTGCACTGCTCAGGTAC 1686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577655991836160