Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_016761.1 Length=38684 Score E Sequences producing significant alignments: (Bits) Value seq22603 197 3e-46 seq40385 147 5e-31 seq46069 143 7e-30 >seq22603 Length=751 Score = 197 bits (218), Expect = 3e-46 Identities = 268/374 (72%), Gaps = 0/374 (0%) Strand=Plus/Minus Query 6300 ATCGTGGAACAGTTGGCTAAAACCAACGACATCCTTACCGATGCGATCTATGTGCCGTGT 6359 |||||||| | | |||| || ||||||||||| | || || || || ||| Sbjct 432 ATCGTGGAGCTGATGGCAAAGCAGAACGACATCCTCATGGACGCCGAGTACATGGAGTGC 373 Query 6360 AACGACGGCTCAAAGCACAAAACCACCATCCGTGCAGGTATTCCTGAACCGGTATGGCGC 6419 ||||||||||| || ||||| |||||||| || | || || ||||| || ||||| Sbjct 372 AACGACGGCTCCAAACACAAGACCACCATGCGCTCGGGCATCCCTGAGCCAACTTGGCGG 313 Query 6420 CGCTATAACCAAGGCGTTCAGCCAACCAAAACCCAGACCGTACCAGTGACCGATACCACC 6479 | ||||| ||||| ||||||| |||| | |||||||| ||| || || ||| Sbjct 312 ATGTTCAACCAGGGCGTGCAGCCAAGCAAATCGACCACCGTACCTGTGCTGGACACGACC 253 Query 6480 GGTATGTTGTACGATCTGGGCTTCGTTGATAAGGCTCTGGCAGACCGTTCTAACAACGCC 6539 || ||| || | || ||| | || ||||| || ||||| |||| |||||| Sbjct 252 GGCATGATGGAAGACTACGGCCTGGTCGATAAAGCGCTGGCTGACCTGAGCGGCAACGCT 193 Query 6540 GCAGCGTTCCGTGTTTCCGAAAACATGGGCAAGCTTCAGGGCTTCAACAACAAAGTCGCC 6599 | |||||||||| ||||| ||| |||||||||| ||||||||||||||||||| | || Sbjct 192 GATGCGTTCCGTGCCTCCGAGAACCTGGGCAAGCTGCAGGGCTTCAACAACAAAGCCTCC 133 Query 6600 CGCTACTCCATCTACGGTAACACAGATGCTGAGCCTGAAGCTTTCATGGGCCTGGCGCCG 6659 |||||| ||||||| ||| | | | ||||| | |||||| |||| ||| | ||| Sbjct 132 CGCTACATGTTCTACGGCAACTCCCAGACCGAGCCACAGGCTTTCCTGGGTCTGACCCCG 73 Query 6660 CGCTTCAACACGCT 6673 |||| |||| |||| Sbjct 72 CGCTACAACTCGCT 59 >seq40385 Length=547 Score = 147 bits (162), Expect = 5e-31 Identities = 369/554 (67%), Gaps = 9/554 (2%) Strand=Plus/Minus Query 6951 GTGACCACGCTGACCAAAGACGCATCAACTGGCGCTGACCTGATCAGCATGATGGTAGAT 7010 || ||||| |||||| || || | || ||||| | |||||| | ||| | | Sbjct 547 GTAACCACCCTGACCTCGGATGCGGCGACCGGCGCCAAGCTGATCGAGAACATGATCAAG 488 Query 7011 GCATATTATGCCCGCGACGTGGCAATGCTTGGTGATGGCAAAGAAGTTATCTATGCCAAC 7070 || ||||| | |||| | |||| || || ||||| || ||||| |||||| Sbjct 487 GCCTATTACCTGCTCGACAACCCGATGCAGGGCGAGGGCAAGACCGTGATCTACGCCAAC 428 Query 7071 AAAACTATCCACGCATGGCTGCACAAACAGGCTATGAATGCCAAAAACGTGAACCTTACC 7130 || ||||| | | |||||| ||||| ||||| |||| ||||| ||||| ||| Sbjct 427 CGCACCATCCAGACCTTCCTGCACCTGCAGGCAATGAACTCCAAGAACGTCAACCTCACC 368 Query 7131 ATCGAAGAGTACGGCGGCAAGAAGATCGTTTCCTTCCTGGGTATTCCTATCCGTCGTGTG 7190 | | ||||||| |||| |||||| | ||||| || || ||| ||| Sbjct 367 CTGGGCGAGTACGCCGGCCGCAAGATCCCGGAACTGCTGGGCATCCCGATCAAGCGTTGC 308 Query 7191 GATGCAATCCTCAACACTGAATCTGCCGTAACGGCGTAAGGAGAGAGAATCATGTTGCTT 7250 || | | | |||||||| ||||| ||| || |||||||| |||||| | | Sbjct 307 GACGAACTGCTCAACACCGAATCCCGCGT---GGTTTAAGGAGATC--ATCATGCTTTTC 253 Query 7251 GATCAACAGGCTT-TGTTCTCCGCGGCTCAGGCCATTACGGCCACCGCGGTATCAACCAA 7309 || ||| | || | | || || ||||| || || ||| | |||| || ||| | Sbjct 252 GA-CAAGAAACTGCTCATGTCGAACGCCCAGGCGATCACCGCCTCGGCGGCCTCGACCGA 194 Query 7310 CGTCATTGACACCGGCTCCAGTAAGGATGTCGGTAAATATGGTGATATCCCGCTGCTGAT 7369 |||||| ||| |||| || ||||| || || | |||||||||||| || Sbjct 193 CGTCATCGACCGCGGCGACACCAAGGACGTAGGCCGTGCGGCCGATATCCCGCTGTGCAT 134 Query 7370 TCAGGTTGTTGAGGCATTCAACACCCTGACAAGTCTGACGGTTACGGTGCAGACCGATGA 7429 ||||| |||||||| |||||||| ||||| |||||||| | |||||||||| || Sbjct 133 CCAGGTGGTTGAGGCCTTCAACACTCTGACCAGTCTGACCATCGAACTGCAGACCGACGA 74 Query 7430 TAACTCGTCTTTCAGTTCTGCAACGGA-CGTGATCTCCATGGTTATTCCTCTGGCATCCC 7488 ||||||| | |||||||| || || | | || |||| ||||| | || ||||| || Sbjct 73 TAACTCGGCCTTCAGTTC-GCCGCGCAGCCTGTTCTCGGTGGTTGTACCACTGGCCGACC 15 Query 7489 TGACCGTTGGGTAC 7502 ||| | ||| ||| Sbjct 14 TGAAGGCTGGCTAC 1 >seq46069 Length=507 Score = 143 bits (158), Expect = 7e-30 Identities = 164/220 (75%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 7459 TGATCTCCATGGTTATTCCTCTGGCATCCCTGACCGTTGGGTACAAAACGCCGGTCATCA 7518 || |||| ||||| | || ||||| ||||| | ||| ||| | ||||||||||||| Sbjct 501 TGTTCTCGGTGGTTGTACCACTGGCCGACCTGAAGGCTGGCTACCAGACGCCGGTCATCA 442 Query 7519 CGCTGCCGATGAAGCTGGAGCGATACATCCGTCTTAACTACACCGTCACTGGTACCGCGC 7578 ||||| || |||| ||||| || | || || ||||||||||| || |||||||||| Sbjct 441 CGCTGTCGCAGAAGACCGAGCGCTATCTGCGCCTCAACTACACCGTAACCGGTACCGCGC 382 Query 7579 CGACCACTGGCAAAGTAACCGCTGGCATTGTTGGCGGGGTGCAGACCAATGTCTAA---A 7635 | ||||||||||| || || ||||| |||| | |||||||||||||||| |||| | Sbjct 381 CAACCACTGGCAAGGTGACTGCTGGTGTTGTGGCGGGGGTGCAGACCAATGGCTAAGACA 322 Query 7636 TATCGCGTAAAAGAACGCTCCTTCATTAACGGCAAGCTCT 7675 || || || ||||| ||||| || || |||||| Sbjct 321 TACGAAGTGCTTGAGCGCTCGTTCATCAATGGGCAGCTCT 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123351426934848