Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq116291 84.2 7e-12 seq120402 80.6 8e-11 >seq116291 Length=2838 Score = 84.2 bits (92), Expect = 7e-12 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 44074 TCCGAATAGTCCTAGGTCGTTCCATGCTGAAAGGATGTTGTGTATGTACTCGCCTTTTTC 44133 |||||||| |||| || | |||| | || | |||||||| |||||| |||| | || Sbjct 2162 TCCGAATATTCCTGTTTCCTGCCATACCGACATTATGTTGTGAATGTACCCGCCCTCATC 2221 Query 44134 ATATTTTCCATAGTTTCCTAGTATTGGGCTTTCCATTATCTTGTTTAGTCCTTCAGATGC 44193 ||| | ||||| || | |||||||||||| | || || | || ||| || || Sbjct 2222 ATACTGACCATAAGCCCCGAATATTGGGCTTTCGAGAATTTTTTCTATTCCCTCGCGCGC 2281 Query 44194 TATACGGCTCCGCTCATTGCTCGAATTGTCATGCTGAAGATCAAGCAGATTTGCTACTCT 44253 || | | |||||||| || || ||||| |||| ||||||| || || | || Sbjct 2282 CATTCTGTCGCGCTCATTACTTGAGTTGTCCTGCTTAAGATCAGCTAGCGCTGTAATCCT 2341 Query 44254 GCTATCTGGAATCTCCACTATTCCAG 44279 || || |||| ||| ||||| |||| Sbjct 2342 ACTCTCAGGAAGCTCTACTATGCCAG 2367 >seq120402 Length=2642 Score = 80.6 bits (88), Expect = 8e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 47536 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 47594 || ||||||||||||||||||||||||| || ||||||||||||||| || || ||||| Sbjct 422 ACTGGATTTAGGTTCCAGCGCCGCAAGGTGTAAGAGTTCGAGTCTCTTCGCCCCCACCA 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156709232733536