Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_016765.1 Length=54024 Score E Sequences producing significant alignments: (Bits) Value seq123535 185 3e-42 seq105916 134 5e-27 seq74572 109 2e-19 seq120402 80.6 9e-11 >seq123535 Length=881 Score = 185 bits (204), Expect = 3e-42 Identities = 299/422 (71%), Gaps = 16/422 (4%) Strand=Plus/Plus Query 3165 AGACCGACAAGGGGAGCAACTGGGGGACAGGGCTTGAACAGCAGATGCTCGCGTTCCTGA 3224 ||||||||||||| ||||||||||| || || || |||||||| | |||| ||||| | Sbjct 397 AGACCGACAAGGGCAGCAACTGGGGCACCGGCCTGGAACAGCAACAGATCGCATTCCTCA 456 Query 3225 CATTCTCGATCAGCTCGATCACCAATCAGATTCAGCAGTGCGTCAACAAGCGGCTGC-TA 3283 | | || |||| || | || | || |||||||||| |||||| || ||| | Sbjct 457 CCTACTGCATCATGTCCTTTACGGCGCCAATCGAGCAGTGCGTGAACAAGTGG-TGCATG 515 Query 3284 ACTGCGCCCGAGCGGAT---TCGCTATTACGCCGAGTTCTCACTTGAGGGGTTCCTGAAG 3340 || ||| || ||||| | ||||| | ||||| || |||||| ||||||| | Sbjct 516 ACGGCGGTGGACCGGATCAATTTCTATT---CGGAGTTTTCCATTGAGGCGTTCCTGCGG 572 Query 3341 GCTGATAGCGCTGGTCGCGCTGCCTGGTACAGCACTATGGCGCAAAACGGTTTCATGACC 3400 || || ||| | || ||||| || | |||||| |||||||| ||||| |||||||| Sbjct 573 GCCGACAGCTCCGGCCGCGCGGCATACCTCAGCACGATGGCGCAGAACGGGTTCATGACT 632 Query 3401 CGCAACGAAGGTCGCCGGAAAGAGAACCTGCCAGAACTCCCCGGCGGAGACATTCTCACC 3460 ||||||||||| | | || || ||||||||| || || || || | |||||| Sbjct 633 CGCAACGAAGGCAGGGGTAAGGAAAACCTGCCAAGTAAGCCTGGTGGGGATGTGCTCACC 692 Query 3461 GTCCAATCCAACCTAGTTCCAATCGACCAACTCGGTCAATC-TAACGAGAGCCAGGCCGT 3519 || || || ||||| || || | ||||| || || ||| | ||||| | || || || Sbjct 693 GTGCAGTCAAACCTGGTACCGCTGGACCAGCT-GGGCAAGCAAAACGATGGGCAAGCTGT 751 Query 3520 CCGCGCCGCGCTCATGAACTGGCT----CAGCCAGCCAGAAC--CACAGGAGTAACCCAT 3573 || ||||| || ||||||||||| |||| | || || | | |||||||||||| Sbjct 752 TCGAGCCGCCCTGATGAACTGGCTGCAAGAGCCGGATAGCACCTCTCGGGAGTAACCCAT 811 Query 3574 GA 3575 || Sbjct 812 GA 813 Score = 145 bits (160), Expect = 3e-30 Identities = 263/382 (69%), Gaps = 2/382 (1%) Strand=Plus/Plus Query 2699 CCATCGAGGGTCGACCTGGAGTGTGATGAAAACGGTCGGCTGAAGTACTTCTATACGACA 2758 || ||||| ||||| || |||| || || | || ||||| | ||| |||| | | | Sbjct 3 CCGTCGAGAGTCGAGCTTGAGTTCGACGATGATGGACGGCTCAGGTATTTCTTCAGGCCC 62 Query 2759 AAGAAGGGTGCTCGTAGAGAGATCGAGCGTACTAACATGCTGCACATCCCGGCGTTCACG 2818 ||||| | || |||||||| |||| ||||||||||||| ||||| || || Sbjct 63 CGAAAGGGACCCCGCCGAGAGATCCAGCGGCAGGACATGCTGCACATTCCGGCTTTTACC 122 Query 2819 CTGGATGGTCGAATTGGTCTCTCTGCAATCAGATACGGCGTTGATGTCTTCGGCTCGGTC 2878 ||||| || || |||| || || || || | ||||||| ||||| ||||| || | Sbjct 123 CTGGACGGGCGGGTTGGGCTGTCCGCCATACGTTACGGCGCAGATGTATTCGGTTCTGCG 182 Query 2879 ATGTCGGCGGAGGACGCAGCCAACGGCACATTCAAGAACGGACTTCTACCCACGGTCGCA 2938 ||||| || || ||||| |||||| |||| ||| |||||| | | ||||||||||| Sbjct 183 ATGTCAGCAGACGACGCCGCCAACAGCACCTTCCGGAACGGCATGATGCCCACGGTCGCG 242 Query 2939 TTCAAGGTTGATCGCATTCTCCAGCCTGCGCAGCGGGAGGAGTTCAGGGAGTATGTGAAG 2998 || ||| || | | | ||||| ||||| | ||||| | ||||| || ||| Sbjct 243 TTTTCGGTCGACAAGACGTTGAACCCTGCCCAGCGCGTTGAGTTTCGTGAGTACGTAAAG 302 Query 2999 TCCGTATCGGGCGCGATGAACTCCGG-AAGATCCCCGGTTCTGGAGCAGGGGATTACCCC 3057 | | || || ||| |||| |||| |||| || || || |||| || | | || Sbjct 303 ACGATCTCCGGGGCGTTGAATGCCGGCAAGA-GTCCTGTGCTCGAGCGAGGTGTGAAGCC 361 Query 3058 TGAAACCATCGGCATCAATCCG 3079 |||| ||||||||||| ||| Sbjct 362 GGAAATGATCGGCATCAACCCG 383 >seq105916 Length=314 Score = 134 bits (148), Expect = 5e-27 Identities = 186/260 (72%), Gaps = 8/260 (3%) Strand=Plus/Plus Query 4756 TCCCTGCGCGGCTCGCATCGCGTATCCATGCCGCGCTCGGCCATCACCTCCATCGACGGC 4815 ||| | || ||||| | || || ||| |||||||| ||||||||||| || || Sbjct 59 TCCTTCCGTGGCTCTCGCCGAGTCTCCGTGCCGCGCGCGGCCATCACC-------ACTGC 111 Query 4816 T-CTGGCGGCGCCCTGGTGGCTCCTGATCGTCGCCCCGGTGTCGTTGCCGCTCCGCAGCG 4874 |||| || | ||||||| | | || || || | |||| | || || || Sbjct 112 AACTGGTGGTGACCTGGTGCAGGCCCAGCGCTTGCCAGGGATTATTGCTCCGCCTCAACG 171 Query 4875 TCGACTGACCATCCGCGACCTGGTTGCGCCTGGCACCACTGAGTCGAACTCCGTCGAGTA 4934 ||||||||| |||||||| |||| ||||| |||||||| || ||||||||| |||| || Sbjct 172 CCGACTGACCGTCCGCGACTTGGTCGCGCCGGGCACCACCGAATCGAACTCCATCGAATA 231 Query 4935 CGTCCGCGAGACCGGCTTCGTCAACAATGCCGCTCCTGTTTCGGAAGGCACCCAGAAGCC 4994 |||||| || ||||||||| |||||| ||| | | || |||| ||| || || Sbjct 232 CGTCCGTGAAACCGGCTTCACCAACAACGCCCGTACCGTGGCGGAGACCACGGCCAAACC 291 Query 4995 ATACTCCGACCTGACCTTCG 5014 ||||| ||||||||||||| Sbjct 292 GTACTCTGACCTGACCTTCG 311 >seq74572 Length=383 Score = 109 bits (120), Expect = 2e-19 Identities = 210/303 (69%), Gaps = 10/303 (3%) Strand=Plus/Minus Query 3703 CACGATCACCATCTACGAGCCGATTGGCTACGACTGGTGGACCGGTGAAGGTGTCACGGC 3762 ||| |||||| | |||| || || | ||||||| ||| || ||||| || Sbjct 371 CACCATCACCGTGTACGGCGTAATCGGTGAAGACTGGTA---CGGCGAGGGTGTGACCCT 315 Query 3763 AAAACGCATTGCTGGCGCTCTGCGCTCCATCGGCAACGATGTCGATGTGACCGTGAACAT 3822 || || |||| || ||| || ||||| |||||| | || | |||||||| ||| | || Sbjct 314 CAAGCGAATTGATGCCGCGCTTCGCTCTATCGGCGA-GAAG--GATGTGACGGTGTATAT 258 Query 3823 CAACAGCCCCGGCGGCGACGTATTCGAAGGCCTGGCCATTTACAACCTGCTGCGCGAGCA 3882 |||| || ||||| ||| | ||||||||| | || || ||||||| ||| ||||| Sbjct 257 CAACTCACCGGGCGGTGACATGTTCGAAGGCATCGCTATCTACAACCGCCTGAAGGAGCA 198 Query 3883 CAAGGGCAAGGTCACGGTGAACATCATCGGCCTGGCTGCCTCTGCCGCCTCTTTCATCGC 3942 || ||||||||| || | ||||| ||||||| || ||||| ||||| Sbjct 197 CAGCCACAAGGTCACCACCAAGGTGCTCGGCATGGCTGCAAGCGCGGCCTCGATCATCTA 138 Query 3943 CATGGCGGGGGATGAAATCCGCATC-GGCC-GCGCCGCCTTCCTGATGATCCATAACGCC 4000 | ||||||| ||| || ||| |||| || ||| || ||||||||||||||| | Sbjct 137 CCTGGCGGGCAGTGA--TCGGCAGGTGGCCAGCAGCGCGTTTCTGATGATCCATAACTGC 80 Query 4001 TGG 4003 ||| Sbjct 79 TGG 77 >seq120402 Length=2642 Score = 80.6 bits (88), Expect = 9e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 27080 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27138 || ||||||||||||||||||||||||| || ||||||||||||||| || || ||||| Sbjct 422 ACTGGATTTAGGTTCCAGCGCCGCAAGGTGTAAGAGTTCGAGTCTCTTCGCCCCCACCA 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 172314085144768