Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_017985.1 Length=40128 Score E Sequences producing significant alignments: (Bits) Value seq155237 96.9 9e-16 seq136675 84.2 6e-12 >seq155237 Length=1413 Score = 96.9 bits (106), Expect = 9e-16 Identities = 270/410 (66%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 1686 TAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAAGTTATTCCTTCCAGCGCCAGATTC 1745 || ||||| | | |||||| | || ||| || || | ||||||| ||||||||| Sbjct 408 TAGGTCCACAGCCTGAGCGGCACGGTACTGAAGGAGGTGAAGCCTTCCAAGGCCAGATTC 349 Query 1746 CATAATTTCCAGCCATTGAATTTTGAATCGCCGGCAACACGTTCGGCACGGGCATATTTA 1805 || | |||||||| ||||| || |||||| ||| |||||| | || | Sbjct 348 CACAGCTTCCAGCCGTTGAACTTGCTGCTGCCGGCGCTGCGTGGGGCACGCTCGTACTCG 289 Query 1806 ACAACATCCGTTTTTC--CGCCAACCCAACTGAGCACACCCTTCATAAACAAGTTGCGTT 1863 || || ||| | || ||| ||||| ||| | |||||||| |||| |||||| | Sbjct 288 AC--CACCCGGGTGTCGAAGCCGACCCAGGAGAGGATGCCCTTCATGAACAGGTTGCGCT 231 Query 1864 CTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCTCATTAACCGAAAGTCGCCAACAT 1923 | |||| | |||||| || || ||| | || ||||| | ||| || || || || | Sbjct 230 CGGGCAGGTCCTTGATGGCATCCACCACCTCGCGACTCATCAGCCGGAAATCACCGACGT 171 Query 1924 TTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAGCTTATAAAACCACTCAGCTGTCT 1983 | |||||||| | | | ||| ||||||||| || || | ||| || ||| Sbjct 170 TCTCTTCGATGGGGGTCTGGGCGATGCGATTGTGCAGGCGGTAGAAGCCCTCGGCGGTCA 111 Query 1984 TACGCTTCAACCTCCCATCAGTTGAG-CGGTCTGAGCGCTTAGCCAGCACCATATCCGCG 2042 ||||| | | | || | || | ||||| |||||| ||||| |||| || ||| Sbjct 110 GCCGCTTGAGCGGGCTGTC-GCTGCGCCGGTCGACGCGCTTGGCCAGTACCACGTCGGCG 52 Query 2043 CCAGCCTGCCACTTCTCAATGAGATGGGGGATAACTTCTATCGGATCCTG 2092 || | |||||| ||| | || | ||||| || || | ||| ||||| Sbjct 51 CCCTGCCGCCACTGCTCGAGCAGCCGCGGGATGACGTCCAGCGGGTCCTG 2 >seq136675 Length=3717 Score = 84.2 bits (92), Expect = 6e-12 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 24969 ATTAAGTGTCAGCCGTTCGAGTGTCCTGATCACTTCTACGTAATTGGCGGTATGGATTTC 25028 || ||||| ||||||| || || |||||||||| || || ||| |||| ||| Sbjct 534 ATCAAGTGCGCGCCGTTCCCATGCCCAGATCACTTCTGGGTCATCAACGGCCTGGACTTC 593 Query 25029 GGATGGGATCACCCACAGGCGCAGGTTCAGCTTTGGTGGGATAAGGACGCAGACACAATC 25088 |||||||||||||| ||||| || || ||||| ||| |||| ||| |||||| || Sbjct 594 GGATGGGATCACCCGCAGGCACATGTGCAGCTGTGGATCGATATGGAGGCAGACGTTATT 653 Query 25089 TACGTTTCACGCGTGTGGAAG 25109 ||||| | | || |||||| Sbjct 654 TACGTCGCTCACGCCTGGAAG 674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127960428137920