Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq115971 122 2e-23 >seq115971 Length=1990 Score = 122 bits (134), Expect = 2e-23 Identities = 480/736 (65%), Gaps = 33/736 (4%) Strand=Plus/Minus Query 23003 CTGCCTTATCTGGCCTGGGCGTTTTCTGTTGACCGCTGGGATGAGAG-CTGGACAGAAAG 23061 ||||| || |||||||||||| || || || |||||||| || | ||||| || | Sbjct 837 CTGCCCTACCTGGCCTGGGCGCGCTCGGTGGATCGCTGGGAC-AGCGACTGGAGCGACAC 779 Query 23062 CGTCAAGCGCCGCGTTGTGCAG--GACGCTTTTTATATCCATCAGCACAAGGGGACAACC 23119 | |||||||| || | || | ||| || | ||| |||||||| || | | Sbjct 778 CACCAAGCGCCAGGTGATCAAGTCGGCGCACTTCGT--CCACGCCCACAAGGGCACCATC 721 Query 23120 CGCGCCGTGCGGCGCGTGGTGGAGCCGTTCGGCTTCCTGATCCGCATCATTGAGTGGTGG 23179 ||||| |||| || |||||||| || | |||| |||||||||| || ||||||||| Sbjct 720 GGCGCCCTGCGCCGGGTGGTGGAACCCCTGGGCTACCTGATCCGCGTCCACGAGTGGTGG 661 Query 23180 CAG---------ACCGGCGAAACGCCGGGAACGTTCCGTCTGGATATTGGCGTACAGGAT 23230 ||| |||||| || ||||| || ||||| ||||| | ||||| | || Sbjct 660 CAGGAGAGCCCGACCGGC---ACTCCGGGCACCTTCCGCCTGGACGTCGGCGTGCTCGAC 604 Query 23231 CATGGTATCACCGAAGACACCTATCTGGAGCT-TGAGCGC-CTGATAAGCGATGCCAAAC 23288 || |||||||| ||| | | | | || ||| | ||||| ||| ||| | Sbjct 603 AGCGGCATCACCGA-GAC-CATGTACGACGCCATGAACCTGCTGATCGACGACGCCCGCC 546 Query 23289 CATGCAGCCGTCATCTGGTTGGTATGTCCATCAACCTGCAGACAGGTGGC-CCGTATTTT 23347 | | |||| || ||||| || || |||||| |||| |||| |||| |||| Sbjct 545 CGGTCGGCCGGCACCTGGTCGGCCTGGCCATCAGCCTGGAGACCCGTGGTGCCGTCAGCG 486 Query 23348 GTGGGGGCAGCCACCTACACCGGCGAAGAAATCACGATCTACCCGTATATCAAC--GAAA 23405 |||| | || |||||| |||||| | || ||||| | || |||| ||| Sbjct 485 TTGGGCTCTGC-ACCTACCAGGGCGAAACCCTGACCGTCTACGCCTAC--CAACCCGAAG 429 Query 23406 CCATTATTTCCGGCGGCACCGCTTATGAGGGCGG-GGCGGT--CCATGTTATTGACACAA 23462 |||| | | ||||| || |||| ||| | ||| | | ||||| Sbjct 428 CCATCGTCGTCAGCGGCCAGGCCCTGCTCGGCGCCGGCAGCACCCACATCCTCGACACCC 369 Query 23463 TGAGAGTGAATCCATGAGCGCAAAATTTTATACCCTGCTGACGGAGATCGGCGCGGCGAA 23522 |||| | |||||||||| | | || | | || |||| ||||||| ||| || Sbjct 368 TGAGCATCTATCCATGAGCCAGACCTACTACGCTATCCTCACGGCCATCGGCGAGGCCAA 309 Query 23523 ACTGGCAAGCGCCGCCGCGCTCGGTGTCCCGCTGAAAATTACCCATATGGCGGTGGGCGA 23582 ||||| | ||||||||||||| | | ||||||| || | |||||||| ||||| Sbjct 308 GCTGGCCAACGCCGCCGCGCTCAACACCACCTTGAAAATCGCCAAGATGGCGGTCGGCGA 249 Query 23583 CGGTGGCGGTGTGCTGCCCACACCCAGCGCGCA-ACAGACCGCGTTAGTTGCTGAGAAGC 23641 || || || | | ||||||| |||| |||||| ||||| || | | | ||| | Sbjct 248 TGGCGGTGGCGCGGTGCCCACGCCCA-CGCGCACCCAGACGGCCCTGGCCGGCGAGTGGT 190 Query 23642 GTCGAGCAGCGCTGAATATGCTGTATATCGACCCGCAGAACAGCAGCCAGATTATTGCTG 23701 || || | || |||| ||| | |||| || | || ||||||||||| ||||| | Sbjct 189 ACCGCGCCGGCCTCAATACCCTGAACGTCGATCCCAACAATAGCAGCCAGATCATTGCCG 130 Query 23702 AGCAAGTGATCCCGGA 23717 | | || ||||| || Sbjct 129 AACTGGTCATCCCCGA 114 Score = 84.2 bits (92), Expect = 5e-12 Identities = 331/512 (65%), Gaps = 9/512 (2%) Strand=Plus/Minus Query 22003 CCGCCGCAGATAGTGGACGTGCC---GGATTTTGAGACGCTGCTGGCTGAGCGCAAGGC- 22058 ||| ||| || |||| || ||| ||| || || | |||||| | |||||||| Sbjct 1841 CCGGCGCCGAGCGTGGTCGAGCCACTGGACTTCGAAAGCCTGCTGCAGGCGCGCAAGGAG 1782 Query 22059 CGCTTTTGTGGCTCTTTATCCTGTGGATGAACAGGACGCGGTGCGGCGCACGC-TGGCGC 22117 ||||| ||| || | || | || || |||| | | |||| || ||| |||||| Sbjct 1781 CGCTTG-GTGAGCCTCTGGCCCGCGGCCGAGCAGGCCACCCTGCGT-GCCCGCCTGGCGC 1724 Query 22118 TGGAATCTGAACCCGTCACCAAGCTGCTGCAGGAAAGCACATACCGCGAAATCCTGCTGC 22177 ||||||| || || | |||||| |||| |||||| ||| || |||||| | ||| ||| Sbjct 1723 TGGAATCCGAGCCGCTGACCAAGTTGCTCGAGGAAAACACCTATCGCGAATTGCTGTTGC 1664 Query 22178 GCCAGCGTATTAACGAAGCTGCGCAGGCGGTGATGGTGGCCTATTCGATGGGAAATGATC 22237 ||||||| | ||||| || || |||| ||| ||||| | | || | ||| | Sbjct 1663 GCCAGCGCGTCAACGAGGCAGCCCAGGGCACCATGCTGGCCAAGGCCCGTGGCAGTGACC 1604 Query 22238 TTGAGCAGCTGGCAGCCAACTGCAACGTGAAACGTCTGACGGTAGTGCCTGCTGATAATG 22297 | || ||| | || || | |||| ||| ||| ||| ||| || || Sbjct 1603 TGGAACAGATCGCCGCGGGCGTCAACCTGACACGCCTGGTGGTCACCCCCGCCCCCCCCA 1544 Query 22298 ATGCAGTACCGCCGGTCGCCGCAGTGATGGAAGATGATGAGGCGCTGCGCCAGCGCATCC 22357 || |||||||| |||||| ||| ||||| || || || |||||| |||| | | Sbjct 1543 GCGCCGTACCGCCTACCGCCGCCGTGCTGGAAACGGACGACGCCCTGCGCGAGCGGGTGC 1484 Query 22358 CTGCAGCATTTGAGGGACTGTCCGTTGCTGGCCCGACGGGA-GCCTATGAATTTCACGCC 22416 || | ||||| || ||| || || ||| || | ||||| | || || Sbjct 1483 AGATGGCCTGGGAGGGCCTCAGCGTGGCCGGACCG-CGCAACGCCTACATCCTGCATGCG 1425 Query 22417 AGAAGTGCGGACGGACGTGTGGCAGATGCCAGCGCAACCAGTCCGGCTCCTGCAGAGGTG 22476 | | || ||| | ||||| || |||||||| ||||| || || || | |||| Sbjct 1424 CGCAACGCCAGCGGTCAGGTGGCCGACGCCAGCGCCACCAGCCCCAGCCCCGCCGTGGTG 1365 Query 22477 GTACTTACCGTACTGAGCCGGGAGGGTGACGG 22508 | ||||| | ||||| ||| || ||||| Sbjct 1364 ACCGTCACCGTGCAGAGCCTGGAAGGGGACGG 1333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108774343489952