Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4302 111 3e-19 >seq4302 Length=1545 Score = 111 bits (122), Expect = 3e-19 Identities = 305/461 (66%), Gaps = 15/461 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCA-ACGAGATGTTCT 47897 |||||| ||||| ||||| ||||||||||| || |||||||||| | || | || || Sbjct 1056 CTGGTACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTA-ATCAGCT 1114 Query 47898 CCATGAAGAGGAAGGGGTTGGGTGTGTTATACA----CCCGTGTCAGGCCCATCTGTTCC 47953 |||| | || ||||| | | ||||| ||| | || ||| | || Sbjct 1115 CCATCCAATCAAATGGGTTCTGCACATCATACAGTTTCCCATATC----CCAACGCACCC 1170 Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTA-T 48012 ||||| ||| |||||| |||||||||| | ||| || |||||| || | | Sbjct 1171 AGCAGCCTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACT 1230 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 ||| ||||| || || | || |||||| ||||||| | || || | || ||| Sbjct 1231 AAGGCGCACGGT-AACGCGTCGCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCGCAC 1289 Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 || ||| ||||| ||| | | | || | || ||| | || ||||| | ||| Sbjct 1290 GATTGACTTCACGCGCTCCTCGGTGAGCTTCATCCGGAGGAG---GGAGTAGAGAAGGCA 1346 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 || ||||| | ||| | |||||| || || ||| | | |||| |||||| ||||| Sbjct 1347 CGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACC 1406 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | ||| | || ||| ||||| || || || ||| || ||||||||||| Sbjct 1407 CGGCATCAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGAT 1466 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAG 48293 |||||||| ||||| || || || ||| |||||| Sbjct 1467 CCCCTCCACGCAGGCGAAGGCCACGATCCGCTCCGCGAAAG 1507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929029026140160