Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_019541.1 Length=45364 Score E Sequences producing significant alignments: (Bits) Value seq118405 100 8e-17 >seq118405 Length=3401 Score = 100 bits (110), Expect = 8e-17 Identities = 263/399 (66%), Gaps = 2/399 (1%) Strand=Plus/Plus Query 27803 ATGGCTGGTTTATTAACAGTAGGTTCAGCCATTTCAAAGATGGATACATATACTGGATTA 27862 |||||||| | ||| |||||| | || ||| | || ||||| | || || ||||| Sbjct 1117 ATGGCTGGCATTGTAAGTGTAGGTGCTGCTATTGCCAAAATGGACAGTTACACAGGATTG 1176 Query 27863 CAAAATCGCCTTAAGTTAGTCACTAACAATCAAGTTGAACTAAATAAAGCAACGGAAGAC 27922 ||||| | | ||| | |||||| ||| |||| |||| |||||| | |||| Sbjct 1177 CAAAACAGGTTAAAGCTTGTCACTGCTTCGCAAACTGAATTAAACCAAGCAATGCAAGAT 1236 Query 27923 ACTTTCCGAATTGCTCAAAAAACCTATTCAG-CATGGGATTCTGTTCTACAGGTCTACCA 27981 || || |||||||||| || | ||| ||||||||||| ||||||||| || Sbjct 1237 ACATTTTCAATTGCTCAAGCCAC-TGGACAGTCATGGGATTCTACAGCACAGGTCTATCA 1295 Query 27982 GCGTTTTAGTGATAATGCCAAAACTTTAAACCTCACAATGGATGACACTGCTCGACTAAC 28041 | ||| ||||||||||| ||| | || | | || ||||| | |||| Sbjct 1296 AAGATTTGCAGATAATGCCAAGCGTTTGGGAATTTCATTTCAAGAAACTGCACTCTTAAC 1355 Query 28042 TGAAACAGTATCAAAAGCAGTTGCGATCAGTGGTGCAAGCGCAGAAGCTGCTGATGCAGC 28101 || |||||| | ||||| || | || ||| | ||| |||| ||| || || || Sbjct 1356 CGATACAGTAGCTAAAGCTATTTCAATATCTGGGGGAAGTGCAGCTAGTGCAGAAGCTGC 1415 Query 28102 TTTAGTACAATTTGGGCAGGCTTTGGCAAGCGGTACATTACGTGGTGAAGAACTCAACTC 28161 ||| || || || || || |||||||| ||| | || ||||||||| | || || Sbjct 1416 TTTGGTGCAGTTCGGTCAAGCTTTGGCTTCAGGTGTGCTTCGCGGTGAAGAATTTAATTC 1475 Query 28162 AGTTATGGAACAAACACCAGCTCTAGCAAAGGCTATTGC 28200 | || || ||| |||| | | || ||| || || || Sbjct 1476 AATTTCAGAGCAAGCACCGGGTTTATTAAAAGCAATCGC 1514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144672845242688