Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_019708.1 Length=37595 Score E Sequences producing significant alignments: (Bits) Value seq48961 197 3e-46 seq69527 196 1e-45 seq46632 196 1e-45 seq82464 150 4e-32 seq39311 141 2e-29 seq108594 123 6e-24 >seq48961 Length=489 Score = 197 bits (218), Expect = 3e-46 Identities = 297/422 (70%), Gaps = 0/422 (0%) Strand=Plus/Minus Query 2340 CGGCCGATAAAGCCATCCAGCTATCGGCTGTATGGGCATGCGTAAGGCTGTTAAGCGAGT 2399 ||| ||| |||||||| ||||| || | || ||||||||||| |||||| | ||| | Sbjct 427 CGGTCGACAAAGCCATGCAGCTGTCCACGGTGTGGGCATGCGTGAGGCTGCTGTCCGAAT 368 Query 2400 CTATTTCAACCCTTCCGCTGAAAATATACGTTCGACAGCCTGACGGTTCGCGTAAAGCGG 2459 | | || || || ||||| ||| | ||| || | || ||||| || ||| | | | Sbjct 367 CCGTCTCCACTCTGCCGCTCAAACTGTACCGGCGCCTCCCAGACGGATCTCGTGAGGTTG 308 Query 2460 CAACAGATCATCCGGCTTATTCGATACTGTGCCGCCGACCCAATTCAGAAATGACACCAT 2519 | | ||| |||||| || | |||||||| || || | || ||||| || Sbjct 307 CCAGAGACCATCCGCTGTACCGCGTGCTGTGCCGAATCCCGAACGCCGAGATGACCCCGC 248 Query 2520 CACGCTTTATGTTGATGGTGGTCGCCAGTATTTGCCTACGCGGTAATGCCTTTGTCGAGA 2579 || || ||| || ||||||| || || |||||||| || |||||||| || ||||||| Sbjct 247 AGCGTTTCATGCTGCTGGTGGTGGCGAGCATTTGCCTGCGAGGTAATGCATTCGTCGAGA 188 Query 2580 AGCTGTTTATCGGCAATAAGCTGGTTTCTCTGGTGCCATTGATGCCCCAGAACATGGTAG 2639 | | ||||| | | | | || | ||||| || | |||||||| |||| | Sbjct 187 AAAAAATGATCGGTAGCAGGATCATTGCCCTGGTACCGCTTCTGCCCCAGTGCATGAGGG 128 Query 2640 TAAAGCGGCTGGATACCGGGAGGCTGGAATACACCTACACCGAGGACGGCAAAAAACGAG 2699 | ||||||| ||| | |||| | ||| | ||||| |||| |||| | ||| | || | Sbjct 127 TGAAGCGGCAGGACAACGGGCGCCTGAAGTACACGTACAGCGAGAATGGCGTGGATCGCG 68 Query 2700 TTATTCCCGAAAAGAACCTGATGCACATCCGGGGATTTGGCCTTGATGGTGTCTGCGGCA 2759 ||||||||||||||||||||||||||||| || |||||||| || || || ||||| | Sbjct 67 ACATTCCCGAAAAGAACCTGATGCACATCCGCGGCTTTGGCCTGGACGGGGTGTGCGGGA 8 Query 2760 TG 2761 || Sbjct 7 TG 6 >seq69527 Length=399 Score = 196 bits (216), Expect = 1e-45 Identities = 273/380 (72%), Gaps = 6/380 (2%) Strand=Plus/Plus Query 3009 CGCAGATGCTTGAGTCGCGGTCGTTCAGCATCGAGGAAATCTGCAGATGGTTCCGCGTAC 3068 |||| ||||| || ||| |||| ||| | |||||||| || ||| | |||||||| || | Sbjct 1 CGCAAATGCTGGAATCGAGGTCTTTCGGGATCGAGGAGATGTGCCGCTGGTTCCGAGTGC 60 Query 3069 CGCCATTTATGGTCGGCCACACATCGAAACAGAGCAGCTGGGCATCGAGTCTTGAGGGTA 3128 |||| || ||||||||||||| || ||| ||||||||| | |||||| Sbjct 61 CGCCCTTCATGGTCGGCCACATGGACAAGCAGTCCAGCTGGGCTGCTTCGGTTGAGGCGC 120 Query 3129 TGAACCTCCAGTTCCTGACGCACACCCTGCGCCCCCTGCTGGTGAACATAGAGCAGGAAA 3188 |||||| || ||||| || ||| |||||| || || ||||| ||||| |||||||| | Sbjct 121 AGAACCTGCACTTCCTCACCAACAGCCTGCGGCCGCTACTGGTCAACATTGAGCAGGAGA 180 Query 3189 TAGGACGGTGCCTGCT-GGACAG--CGAT---GATGAGGTTTTCGCGGAGTTCTCTGTAG 3242 | || |||||| | || || |||| || || ||||| ||||| |||| | Sbjct 181 TCACTCGCTGCCTGATCGGCGAGGCCGATGCCGACGACTACTTCGCCGAGTTTGCTGTGG 240 Query 3243 AAGGACTGCTGCGCGCCGACAGCGCGGGCCGTGCTGCGTACTATACCAGTGCGCTCCAGA 3302 |||| |||||||| || || || || ||||| | || | || | || || || || | Sbjct 241 AAGGCCTGCTGCGGGCAGATAGTGCCGGCCGCGGAGCCTGGTACAACACGGCCCTGCAAA 300 Query 3303 ATGGGTGGATGTCCCGCAATGACGTGCGCCGTCTTGAGAATATGCCACCGATTGAAGGGG 3362 |||| |||||||| ||||| || |||||||| || ||||| |||| ||||| || | Sbjct 301 ATGGCTGGATGTCTCGCAACGAGGTGCGCCGGCTGGAGAACCTGCCGCCGATCCCCGGTG 360 Query 3363 GTGACATTTACACCGTTCAG 3382 | |||| ||||| || ||| Sbjct 361 GCGACACGTACACGGTCCAG 380 >seq46632 Length=504 Score = 196 bits (216), Expect = 1e-45 Identities = 314/446 (70%), Gaps = 4/446 (1%) Strand=Plus/Minus Query 2246 GCTCTGCTTAACTGGCTTGGTGTGCCTATCAGCCTGACTACCGGCACGTTCTGGGAGGAA 2305 || |||| |||||||| || || || ||| || ||| |||| | || ||| |||| Sbjct 451 GCGCTGCAAAACTGGCTCGGGGTACCCATCGGCTTGAAGGACGGCGCATTTTGGCAGGAG 392 Query 2306 TGGTTTGGTACCAGCAGCAGC-GGAAAGGTGGTCACGGCCGATAAAGCCATCCAGCTATC 2364 ||||| || | | | || | |||||| || ||| ||| || ||||| ||||| || Sbjct 391 TGGTTCGGCAGCTCC-GCTTCTGGAAAGCATGTATCGGTCGACAAGGCCATGCAGCTGTC 333 Query 2365 GGCTGTATGGGCATGCGTAAGGCTGTTAAGCGAGTCTATTTCAACCCTTCCGCTGAAAAT 2424 ||||||||||||| || |||||||| ||| || |||| || || ||||| || | Sbjct 332 CACTGTATGGGCATGTGTGAGGCTGTTGTCCGAATCCGTTTCCACGCTCCCGCTCAAGCT 273 Query 2425 ATACGTTCGACAGCCTGACGGTTCGCGTAAAGCGGCAACAGATCATCCGGCTTATTCGA- 2483 || || | || |||||||| || ||| || | | | || ||| | |||| Sbjct 272 GTATCGGCGTCTTCCCGACGGTTCACGCGAAGTCGCCAGAAACCACCCGTTGT-TTCGCG 214 Query 2484 TACTGTGCCGCCGACCCAATTCAGAAATGACACCATCACGCTTTATGTTGATGGTGGTCG 2543 | ||||||||| || || | || ||||| || ||||| ||| || ||||||| | Sbjct 213 TGCTGTGCCGCATCCCGAACGCCGAGATGACCCCGCAGCGCTTCATGCTGTTGGTGGTGG 154 Query 2544 CCAGTATTTGCCTACGCGGTAATGCCTTTGTCGAGAAGCTGTTTATCGGCAATAAGCTGG 2603 | ||||| ||||| || ||||||||||||||||||||| | | ||||||| || | | Sbjct 153 CGAGTATCTGCCTCCGGGGTAATGCCTTTGTCGAGAAGAAGATGATCGGCAGTAGGATCA 94 Query 2604 TTTCTCTGGTGCCATTGATGCCCCAGAACATGGTAGTAAAGCGGCTGGATACCGGGAGGC 2663 | | |||||||| | | |||||| |||| || ||||||| ||| | |||| | | Sbjct 93 TCGCCCTGGTGCCCCTTCTTCCCCAGTGCATGAGGGTGAAGCGGCAGGACAACGGGCGCC 34 Query 2664 TGGAATACACCTACACCGAGGACGGC 2689 || | ||||||||||||||| | ||| Sbjct 33 TGAAGTACACCTACACCGAGAATGGC 8 >seq82464 Length=362 Score = 150 bits (166), Expect = 4e-32 Identities = 254/362 (70%), Gaps = 8/362 (2%) Strand=Plus/Minus Query 2677 CACCGAGGACGGCAAAAAACGAGTTATTCCCGAAAAGAACCTGATGCACATCCGGGGATT 2736 ||||||| | ||| | | || | ||||||||| ||||||||||||||||| || || || Sbjct 362 CACCGAGAATGGCGTAGATCGCGATATTCCCGAGAAGAACCTGATGCACATTCGCGGCTT 303 Query 2737 TGGCCTTGATGGTGTCTGCGGCATGATGCCAATGATGACAGGTCGTGACGTGATCGGCGC 2796 |||||| ||||| || ||||| ||| | || | | || || ||||| | ||||| | Sbjct 302 TGGCCTCGATGGGGTATGCGGGATGCTCCCGGTCACCACCGGGCGTGAGATCTTCGGCTC 243 Query 2797 GGCGATGGCCGTCGAAGAATCCGCTGCAAAGATTTTCGAAAATGGCCTGCAAAGCTCCGG 2856 ||| ||||| |||| || |||| || ||| | |||| | || ||| | ||| | | Sbjct 242 GGCCATGGCGATCGAGGAGGCCGCGGCGAAGGTGTTCGCTCAGGGGATGC-AGGCTTCCG 184 Query 2857 GTTTCTTTCAGCTGACGTGGCGCTTGATAA----GGATCAAAGAGAGCGACTTCGGGGCT 2912 | || | ||| | || || | ||||| | | || | |||| || |||| | Sbjct 183 GCATC-CTGAGCAG-CGATGC-CAAGATAACGCCGCAGCAGCGCGAGCAGCTGCGGGCCA 127 Query 2913 ATATGCAGGCCTTTACCGGTTCTAAAAACGCCGGAAAAATTATGGTTCTTGAGGGCGGGC 2972 |||||||| || | || || || |||||||| || || ||||| |||| ||| Sbjct 126 GCATGCAGGCGTTCATGGGATCGAAGAACGCCGGCAAGATCATGGTGGCGGAGGCCGGCT 67 Query 2973 TGAAATATCAGAACGTCACTATGAACCCGGAAGCAGCGCAGATGCTTGAGTCGCGGTCGT 3032 | || || ||| | |||| |||||||| ||||| ||||| ||||| ||||| ||||| | Sbjct 66 TCAAGTACCAGGGCATCACGATGAACCCCGAAGCTGCGCAAATGCTCGAGTCCCGGTCTT 7 Query 3033 TC 3034 || Sbjct 6 TC 5 >seq39311 Length=555 Score = 141 bits (156), Expect = 2e-29 Identities = 186/258 (72%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 3131 AACCTCCAGTTCCTGACGCACACCCTGCGCCCCCTGCTGGTGAACATAGAGCAGGAAATA 3190 ||||| || ||||| || ||| |||||| || |||||||| ||||| |||||||| || Sbjct 53 AACCTGCATTTCCTCACCAACAGCCTGCGGCCGCTGCTGGTCAACATCGAGCAGGAGATT 112 Query 3191 GGACGGTGCCTGCTGGACAGCGATGATGAGGTT------TTCGCGGAGTTCTCTGTAGAA 3244 || |||||| | | | | ||||| | ||||| |||||| | || ||| Sbjct 113 ACCCGCTGCCTGATCGGCGAGGCTGATGCCGACGAATACTTCGCCGAGTTCGCGGTGGAA 172 Query 3245 GGACTGCTGCGCGCCGACAGCGCGGGCCGTGCTGCGTACTATACCAGTGCGCTCCAGAAT 3304 || ||||||||||| |||||||| ||||| | || | || | || || || || ||| Sbjct 173 GGTCTGCTGCGCGCGGACAGCGCCGGCCGCGGGGCCTGGTACAACACGGCTCTGCAAAAT 232 Query 3305 GGGTGGATGTCCCGCAATGACGTGCGCCGTCTTGAGAATATGCCACCGATTGAAGGGGGT 3364 || |||||||| ||||| || ||||| || || ||||| |||| || || ||| ||| Sbjct 233 GGCTGGATGTCTCGCAACGAGGTGCGGCGGCTGGAGAACCTGCCGCCTATCCCAGGCGGT 292 Query 3365 GACATTTACACCGTTCAG 3382 |||| ||||| || ||| Sbjct 293 GACACCTACACGGTCCAG 310 >seq108594 Length=309 Score = 123 bits (136), Expect = 6e-24 Identities = 198/278 (71%), Gaps = 10/278 (4%) Strand=Plus/Minus Query 2790 TCGGCGCGGCGATGGCCGTCGAAGAATCCGCTGCAAAGATTTTCGAAAATGGCCTGCAAA 2849 ||||| |||||||||| |||| ||| |||| || ||| | |||| | | ||| |||| Sbjct 273 TCGGCTCGGCGATGGCGATCGAGGAAGCCGCGGCGAAGGTGTTCGCACAGGGCATGCAGG 214 Query 2850 GCTCCGGGTTTCTTTCAGCTGACGTGGCGCTTGATAAGG----ATCAAAGAGAGCGACTT 2905 ||||| | || ||| | || || | ||| | | | || | |||| ||| Sbjct 213 CGTCCGGCATCCTG--AGCAG-CGACGC-CAAGATCACGCCGCAGCAGCGCGAGCAGCTT 158 Query 2906 CGGGGCTATATGCAGGCCTTTACCGGTTCTAAAAACGCCGGAAAAATTATGGTTCTTGAG 2965 |||| | |||||||| || | ||||| ||||||||||| || || ||||| || Sbjct 157 CGGGCCAGCATGCAGGCATTCATGGGTTCGAAAAACGCCGGCAAGATCATGGTGGCGGA- 99 Query 2966 GGCGGGC-TGAAATATCAGAACGTCACTATGAACCCGGAAGCAGCGCAGATGCTTGAGTC 3024 ||||||| | || || ||| | |||| |||||||| ||||| ||||| ||||| || || Sbjct 98 GGCGGGCTTCAAGTACCAGGGCATCACGATGAACCCTGAAGCCGCGCAAATGCTGGAATC 39 Query 3025 GCGGTCGTTCAGCATCGAGGAAATCTGCAGATGGTTCC 3062 | |||| ||| | |||||||| || ||| | ||||||| Sbjct 38 GAGGTCTTTCGGGATCGAGGAGATGTGCCGCTGGTTCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119875525058016