Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq155237 170 6e-38 >seq155237 Length=1413 Score = 170 bits (188), Expect = 6e-38 Identities = 408/615 (66%), Gaps = 4/615 (1%) Strand=Plus/Minus Query 6028 ATATCGAGGGCGCTGCTTAACCTCAGTGTAAATTCTTCCAATATATTCCCCCAGGACACC 6087 ||| || ||||| |||| ||| |||| || | || || ||||| ||||| || || Sbjct 613 ATAGCGCGGGCGGCGCTTGGTCTCGATGTAGATGCGGCCGATGTATTCGCCCAGCACCCC 554 Query 6088 TATCCCTATAAGCTGGACGCCGCCAAGGAAAAGGATAGAAACCAGAAGGGATGGATATCC 6147 || || || || || |||||||| | ||| ||||| | || || || ||||| || Sbjct 553 GATGCCGATCAGTTGCACGCCGCCGAAGAAGAGGATGGCGGTCATCAGCGAGGGATAGCC 494 Query 6148 GCGAACCGGGTTGCCAAAGGCAAGCGTGTCGACAATCATCCACGCTCCATAGAGAAATGA 6207 | ||||||||||| || | ||| || || | ||| | | ||||| | || Sbjct 493 CGGCACCGGGTTGCCGAATACCAGCTTGCGGAACACCATGACCCCGGCATAGGCCAGGGA 434 Query 6208 CAGCCCGGCCACTAACAACCCAATGTACGTCCACATTCTCAGAGGAAAGGTCGAGAAGCT 6267 |||| ||| || || | || ||||||| || || || | ||| |||| Sbjct 433 CAGCAGGGCGACGCCGCCACCGAGATAGGTCCACAGCCTGAGCGGCACGGTACTGAAGGA 374 Query 6268 GGTAATACCCTCAAGCGCGAGATTCCAGAGTTTCCACCCGTTAAATTTGGTGCTTCCTGC 6327 ||| | || || | || |||||||| || ||||| ||||| || ||| |||| || || Sbjct 373 GGTGAAGCCTTCCAAGGCCAGATTCCACAGCTTCCAGCCGTTGAACTTGCTGCTGCCGGC 314 Query 6328 CACGCGTTCAGCGCGCGAATACTCAACTACGTCAGTGCGTCC--GCCGACCCATGACAGG 6385 |||| || ||| ||||| || || | | | ||| ||||||||| || ||| Sbjct 313 GCTGCGTGGGGCACGCTCGTACTCGACCAC--CCGGGTGTCGAAGCCGACCCAGGAGAGG 256 Query 6386 ACTCCTTTCATGAACAGGTTCCGCTCAGGCATTAGCTTGATGTTTTCTACTACCTCACGA 6445 | || |||||||||||||| ||||| |||| ||||||| || || ||||| ||| Sbjct 255 ATGCCCTTCATGAACAGGTTGCGCTCGGGCAGGTCCTTGATGGCATCCACCACCTCGCGA 196 Query 6446 GACATCAGGCGAAAATCACCCACGTTTTCCTCGATTTGTGGGTTGCTTATTTTGTTGTGC 6505 |||||| || |||||||| ||||| || ||||| | | | | || |||||| Sbjct 195 CTCATCAGCCGGAAATCACCGACGTTCTCTTCGATGGGGGTCTGGGCGATGCGATTGTGC 136 Query 6506 AGCTTATAGAACATTTCAGCGCTTTTGCGCTTCAGGTGACCGTCAGTGGAGCGGTCTGTG 6565 || ||||| || ||| | ||||| || | | ||| || ||||| | Sbjct 135 AGGCGGTAGAAGCCCTCGGCGGTCAGCCGCTTGAGCGGGCTGTCGCTGCGCCGGTCGACG 76 Query 6566 CGTTTAGCCAGTACCATATCTGCGCCAGTCTGCCAGCGCTGTATCAACTGCGGGATAACA 6625 || || |||||||||| || ||||| | |||| ||| | || | ||||||| || Sbjct 75 CGCTTGGCCAGTACCACGTCGGCGCCCTGCCGCCACTGCTCGAGCAGCCGCGGGATGACG 16 Query 6626 TCAATTGGGTCCTGC 6640 || | ||||||||| Sbjct 15 TCCAGCGGGTCCTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151844885203424