Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq115971 232 1e-56 >seq115971 Length=1990 Score = 232 bits (256), Expect = 1e-56 Identities = 1189/1856 (64%), Gaps = 79/1856 (4%) Strand=Plus/Plus Query 1934 TTCGCCACGGCCACCATATCGCCGTCGGCATCAAACAGGCCGATTTCACGTATCCAGAAG 1993 || || ||||| | || | ||||||| || |||| || ||||| || |||||| | Sbjct 42 TTGGCGACGGCGATCAGGTTGCCGTCGCTGTCGTACAGCCCCATTTCGCGGATCCAGTTG 101 Query 1994 CCGCCCTCATTTTCAGGAATGACCTGCTCGGCAATAATCTGGCTGCTGTTCACCGCGTCC 2053 ||||| || || |||||| | |||||||| ||||||||||| || | || Sbjct 102 CCGCCGGTGGCCTCGGGGATGACCAGTTCGGCAATGATCTGGCTGCTATTGTTGGGATCG 161 Query 2054 ACGCTCAGCGAATTTAGCGCGGCGCGGCGCTTTTCATTAACGAGCCTGG----TCTGTGA 2109 ||| |||| | ||| || |||||||| | || | | ||| || |||| | Sbjct 162 ACGTTCAGGGTATTGAGGCCGGCGCGGTAC----CACTCGCCGGCCAGGGCCGTCTGGGT 217 Query 2110 A-GCGTCAGGCGTTGGTAACGTGCCGCCGCCGTCACCCACGGCCATTTCGGTAATCTGGA 2168 |||| ||||| || | || ||| ||||| || || || ||||| | || || | | Sbjct 218 GCGCGTG-GGCGTGGGCACCGCGCCACCGCCATCGCCGACCGCCATCTTGGCGATTTTCA 276 Query 2169 TTTTGGTGCCGAGCGCCGCTGCGTTGGCGAGCTTGGCCGCGCCCTGATT--CGTCAGCAG 2226 ||||| |||||| || |||||||| ||||||||| |||| ||| ||| || | Sbjct 277 AGGTGGTGTTGAGCGCGGCGGCGTTGGCCAGCTTGGCCTCGCC--GATGGCCGTGAGGAT 334 Query 2227 GGCATAGAATTTTGTTGTCATGCGTGTACGTCCGTCAGG---TCAGTAATATGCA--CCG 2281 || ||| | | ||||| | | | ||||| || || || | | Sbjct 335 AGCGTAGTAGGTCTGGCTCATGGATAGATGC---TCAGGGTGTCGAGGATGTGGGTGCTG 391 Query 2282 CTG-CGCCG-GTATAACCCGGCCCGCTCACGGTAATGGTTTCAGGTGTGTAAGGGTAAAC 2339 | | ||||| | | || |||| ||| ||| |||| ||| ||| ||| | ||| || Sbjct 392 CCGGCGCCGAGCAGGGCCTGGCC-GCTGACGACGATGGCTTCGGGTTGGTAGGCGTAGAC 450 Query 2340 GGTCAGCTCATCCCCACTGTAGGCTGCTGCTGC-AAC-----CGGCAGCGCGCCGGTTGA 2393 |||||| || || ||||| ||| | | ||| ||||| | || ||| Sbjct 451 GGTCAGGGTTTCGCCCTGGTAGG-TGCAGAGCCCAACGCTGACGGCACCACG--GGTC-- 505 Query 2394 GTCCAGGTTAATCGACAGCCCGATAAGGTGGCGACTGCAGGGTTTTGCATCCGCTATCAG 2453 |||||| | || | ||| |||| ||||| || | | || || || | ||||| Sbjct 506 -TCCAGGCTGATGGCCAGGCCGACCAGGTGCCGGCCGACCGGGCGGGCGTCGTCGATCAG 564 Query 2454 GCGCTCCAGCTCGGTATACATTTCCTGCGTAATGCCGGTATCCAGCACGCCCACGTCCAG 2513 | | || || ||||| || || |||||| | || |||||||| |||||||| Sbjct 565 CAGGTTCATGGCGTCGTACATGGTCTCGGTGATGCCGCTGTCGAGCACGCCGACGTCCAG 624 Query 2514 GCGAAACGTGCCGGG--TGCCTCACCGGTTTTCC----ACCACTCAATGATGCGGATCAG 2567 ||| || ||||| || |||| | || | ||| ||||||| || ||||||||| Sbjct 625 GCGGAAGGTGCCCGGAGTGCCGGTCGGGCTCTCCTGCCACCACTCGTGGACGCGGATCAG 684 Query 2568 ATAGCCGAGCGGCTCCACCACGCGACGCAGCGAGCCGATGGTGCCTTTATGCCGGTGAAC 2627 ||||| || || |||||||| || ||||| | |||||||||||| || || ||| || Sbjct 685 GTAGCCCAGGGGTTCCACCACCCGGCGCAGGGCGCCGATGGTGCCCTTGTGGGCGTGGAC 744 Query 2628 GTATTCCGACGCGGCGACCACGCTGCGCTTTGTGGCTTCCGGCCAGCTGGCATCCCAGCG 2687 | | | || || || ||| |||||| |||| || |||| | |||||||| Sbjct 745 GAAGTGCGCCGACTTGATCACCTGGCGCTTGGTGGTGTCGCTCCAGTCGCTGTCCCAGCG 804 Query 2688 GTCAACCGACCAGGCCCAGGCGAGATACGGCAGCAGCTCAACCGGGCA--GGTCTGCGCG 2745 || ||||| | |||||||| || || |||||||| | ||||||| |||| | | Sbjct 805 ATCCACCGAGCGCGCCCAGGCCAGGTAGGGCAGCAGTGCCTCCGGGCAACGGTCGG---G 861 Query 2746 TTCCAC-AGTTTGCGCAGCGGCACCGGAATGGTTTCTATCTTCGCGCAGGCTTCAGCAGC 2804 || | || | |||||| || || || | | || || ||| || || || Sbjct 862 ATCGGCCAGGTCGCGCAGTGGGACGGGCACCTCGCCGATGCCGGCCAGGGCCTCGGCGGC 921 Query 2805 GGCCACTTCCAGCACCGATGAGCCGGACGGCAGCA-GGCGATCACTCATCTGAACCCCCG 2863 | | |||||| | | || |||||||| || | ||| | || || ||| Sbjct 922 GAGCCGTTCCAGGTAGGTGCTGTTGGGCGGCAGCAAGGTGTTCA-TGGTCAGACGCCC-- 978 Query 2864 ACCGTTATGCGGTAGCCGGTGCAGTAGGCGGCCTGCGTCTTGTCCAGCACCACGTCGGCC 2923 | || | || | | ||||||| ||||| ||||| | | | | | || ||| | Sbjct 979 AAGGTAACGCTGCTGGCGGTGCAATAGGCCGCCTGGGCTTCGCTCGGGGTCAGGTC--CT 1036 Query 2924 GCCGGCTGCGCCAGTTCAACACGCTGCACGCCCTCAACATGCAGCGCGGCATACAGCGCT 2983 ||| | | | || || || | |||||| | || ||||| ||||||| | | Sbjct 1037 GCCAG-TCCTTGAGCTCGACCCAGGCCACGCCGGCGACGTGCAGGGCGGCATCGATGCCG 1095 Query 2984 GACTTGCGAATGTCACG-GCCGAGGCGGGCCTGCGC--GCTGACAAAGGCAGCGAGCTTT 3040 || |||| || | |||||||||| | |||| | |||| ||| || | || Sbjct 1096 GAGC-GCGACACTCGCACGCCGAGGCGG--CGGCGCTGGTTGACGTAGGTGGCCAACTGC 1152 Query 3041 TTCTCGGCAGCGGCGCGCACAGGTTCAGCTTCCGGCCCCGG-ATAGA---GGTACAGCGC 3096 | | ||| | ||| | | | || | || ||| |||| || || ||| |||| | Sbjct 1153 TGCCGGGCGGTGGCCAGGATAACCTCGCCCTC-GGCACCGGTATTGACCAGGTGCAGCAC 1211 Query 3097 CGCCTCAACGGCATAATTTACGATAGCGGCCGACTGCACCGTGACGCGATCGGCCACCGG 3156 |||| || || | | ||| || |||||||| | | |||||| | ||||| Sbjct 1212 GGCCTTGACCTGGTAGGTGAGGATCTGCGCGGACTGCACGATCAGGCGATCACCTACCGG 1271 Query 3157 GCGCACGTTCTCATCGTTCAGCGC--GGCATCCACCACGGCCAGCAGGTCGGATGGGGCT 3214 |||||||| || || || || || ||| || |||||||| |||| | ||| Sbjct 1272 GCGCACGTCTTCGTCATTGAGGGCCTGGCTG--ACGGTGGCCAGCAACTCGGGGGAGGCG 1329 Query 3215 TCGCCGTTACCCTCACGCGACAGCACCGTGACGGTGACGCAGGCGGGCGACGGGCTGATG 3274 ||||| || || | | |||| |||||||| || |||||| |||||| || Sbjct 1330 CTGCCGTCCCCTTCCAGGCTCTGCACGGTGACGGTCACCACGGCGGGGCTGGGGCTGGTG 1389 Query 3275 GCCGAGGCATCCGCCACGCGGCCGTCGGCGCTTTTCGCATGATATTCGTAGGCACCGGTC 3334 || ||| || ||||| | ||| |||| | |||||| |||||| | | Sbjct 1390 GCGCTGGCGTCGGCCACCTGACCGCTGGCGTTGCGCGCATGCAGGATGTAGGCGTTGCGC 1449 Query 3335 GGCCCGGCCACGCTCAGCCCCTCAAAGGCAGACGCCACGCGCAGCCGGAAATCGTCGTTA 3394 || ||||||||||| || ||||| |||| | ||| ||| || | |||||| Sbjct 1450 GGTCCGGCCACGCTGAGGCCCTCCCAGGCCATCTGCACCCGCTCGCGCAGGGCGTCGTCC 1509 Query 3395 CTTTCCATCACTGCGGGCGTCGGCGGGATGGTGGTATTGTCGGCCGGGGTAAGTGTCAGG 3454 |||||| ||| |||| || ||||| | || | | | ||| ||||| | |||| Sbjct 1510 GTTTCCAGCACGGCGGCGGTAGGCGGTACGGCGCTGGGGGGGGCGGGGGTGACCACCAGG 1569 Query 3455 CGGGTAACGCCGTTGTTTGCGCCGAGCTGGTCAAGGTCACCGTCACTGGCGTAGGCCACC 3514 || || | | | | ||| ||| ||| || ||||||| | ||| ||| | ||||| | Sbjct 1570 CGTGTCAGGTTGACGCCCGCGGCGATCTGTTCCAGGTCACTGCCACGGGCCTTGGCCAGC 1629 Query 3515 ATATTTGCCTGCGCCGCTTCATTCACGCGCTGGCGCAGAATGACCTCGCGGTAGGCGTTT 3574 || | |||| || || || || ||||||||||||| | | ||||| |||| |||| Sbjct 1630 ATGGTGCCCTGGGCTGCCTCGTTGACGCGCTGGCGCAACAGCAATTCGCGATAGGTGTTT 1689 Query 3575 TCCTGTAACAGCTTCACAATCGGCTCAGACTCCAGCGCCAGCGTGCGGGCA---ATGGTC 3631 |||| | || ||| | |||||| || ||||||||||| ||||||| | ||| Sbjct 1690 TCCTCGAGCAACTTGGTCAGCGGCTCGGATTCCAGCGCCAG---GCGGGCACGCAGGGTG 1746 Query 3632 GCCTGCTGCTCAGCCGGGTA-AAGCGAAATCAGCGTGGCTTTGCGTTCGGCCAGCAGCGT 3690 ||||||| | || || | | || | |||| | ||||| | |||||| | Sbjct 1747 GCCTGCTCGGCCGCGGGCCAGAGGCTCACCAAGCG-CTCCTTGCGCGCCTGCAGCAGGCT 1805 Query 3691 TTCGTAATCCAGCACCTCAACCACATCGGGCGCAGGCAGCTGGCTCAGGTCAATGG 3746 |||| | ||||| ||| ||||| ||||| || ||||| |||||||| |||| Sbjct 1806 TTCGAAGTCCAGTGGCTCGACCACGCTCGGCGCCGGTAGCTGACTCAGGTCGATGG 1861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94241945652288