Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq149362 113 4e-20 seq55328 98.7 8e-16 seq161123 86.0 5e-12 seq135156 86.0 5e-12 seq204338 84.2 2e-11 seq126729 84.2 2e-11 >seq149362 Length=6446 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || |||||||| || | || || || || || ||| || |||| || Sbjct 1971 AATGCAGATCTTTGTAAAGACGCTTACAGGGAAGACAATCACCTTGGAGGTGGAAAGCTC 2030 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || ||||| ||||||| ||||| ||||| | ||| |||||| Sbjct 2031 TGATACAATTGACAATGTCAAGGCAAAAATCCAGGACAAGGAGGGTATCCCCCCAGATCA 2090 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || ||||| |||||||| | |||| | || || || || Sbjct 2091 GCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAAGACGGAAGAACTCTTGCAGACTACAA 2150 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||||||| |||||||| ||||| |||| Sbjct 2151 CATTCAAAAGGAATCTACCTTGCACTTGGT 2180 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || |||||||| || | || || || || || ||| || |||| || Sbjct 1743 AATGCAGATCTTTGTAAAGACGCTTACTGGGAAGACAATCACCCTGGAGGTGGAAAGCTC 1802 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || ||||| || ||| ||||| ||||| | ||| |||||| Sbjct 1803 CGATACAATTGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 1862 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || ||||| ||||| || | |||| | || || || || Sbjct 1863 GCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGACTACAA 1922 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||||||| ||||| || ||||| |||| Sbjct 1923 CATTCAAAAGGAATCAACCTTGCACTTGGT 1952 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || || || || ||||||||||| ||| |||| || Sbjct 2199 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 2258 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | ||||| ||| || |||||||| || | ||| ||| || Sbjct 2259 AGACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 2318 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || || ||||| || || || | || || | || |||| ||||| || Sbjct 2319 GCAGAGGCTCATTTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 2378 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||| ||||| || |||||||| |||| | | |||| || ||||| Sbjct 2379 CATTCAGAAAGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGGGAT 2429 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 28627 ATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCT 28686 || ||||| ||| ||| ||||| ||||| | ||| |||||| ||||| || |||| Sbjct 1589 ATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATACCCCCAGATCAGCAGAGGCTCATCT 1648 Query 28687 TTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAAT 28746 |||| |||||||| | || ||| || | ||||||||||| || ||||| || | Sbjct 1649 TTGCCGGCAAACAGCTAGAGGATGGCCGCACCCTTGCCGATTATAATATCCAAAAGGAGT 1708 Query 28747 CTACTCTGCACATGGT 28762 ||||||| ||| |||| Sbjct 1709 CTACTCTTCACCTGGT 1724 >seq55328 Length=456 Score = 98.7 bits (108), Expect = 8e-16 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 ||||||||||||||| |||||||| |||||||||||||||||| | |||| | || || Sbjct 9 AGATCAACAGAGACTGATCTTTGCTGGCAAACAATTGGAAGATGGGAGAACTCTTGCGGA 68 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 ||| ||||| |||| || || ||||| ||| |||| || || Sbjct 69 TTACAACATCTAAAAGGAGTCGACTCTTCACTTGGTGTTGAG 110 >seq161123 Length=4290 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || | || || || || || || || |||| || Sbjct 2779 AATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACAATCACATTGGAGGTGGAAAGCTC 2720 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | || ||| ||| ||||| ||||| | ||| |||||| Sbjct 2719 TGATACAATTGACAATGTTAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 2660 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || ||||| ||||| || | |||| | || || || || Sbjct 2659 GCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCGGACTACAA 2600 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||||||| ||||| || ||||| |||| Sbjct 2599 CATTCAAAAGGAATCAACATTGCACTTGGT 2570 >seq135156 Length=1536 Score = 86.0 bits (94), Expect = 5e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 28666 TAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCG 28725 ||||||| ||||| || |||||||| || ||||| ||||| ||| | |||| | || | Sbjct 1212 TAGATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGATGGAAGAACTCTTGCAG 1153 Query 28726 ATTATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||| ||||||||||| ||||| || ||||| |||| Sbjct 1152 ATTACAACATTCAAAAGGAATCAACATTGCACTTGGT 1116 >seq204338 Length=3429 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 |||||||||||| | || ||||| || || |||||||||||| | |||| | || ||| Sbjct 2947 GATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAAGATGGAAGAACTCTTGCAGAT 3006 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 ||| |||| ||||| || || ||||| ||| | || ||||| Sbjct 3007 TATGACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTAAG 3047 >seq126729 Length=3148 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| || ||||| ||||||| || ||||| ||| ||| ||| ||| Sbjct 553 ATGCAGATATTCGTGAAAACCCTAACGGGCAAGACCATCACCCTCGAGGTGGAGAGTTCC 612 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||||| || || ||||| ||||| | ||| ||| || Sbjct 613 GACACCATCGACAACGTCAAGGCCAAGGTCCAGGACAAGGAGGGCATCCCCCCAGACCAG 672 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || ||||| || ||||| || ||||| ||| ||| | || ||||||||| Sbjct 673 CAGAGGCTCATCTTCGCCGGCAAGCAGTTGGAGGATGGCCGCACTCTCGCAGATTATAAC 732 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || || || || ||||| || ||| Sbjct 733 ATCCAGAAGGAGTCTACACTCCAC 756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424289982054096