Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_020198.1 Length=36947 Score E Sequences producing significant alignments: (Bits) Value seq7292 147 5e-31 >seq7292 Length=1256 Score = 147 bits (162), Expect = 5e-31 Identities = 371/555 (67%), Gaps = 18/555 (3%) Strand=Plus/Plus Query 16998 GGCCGATCTGCGGGCCATCTTCGCCCTGCGGCCAGCCGCCGCTATCGAGTACCTGGAGCG 17057 ||||||||| || ||||||| |||| ||||||||||| |||| ||||| || | Sbjct 302 GGCCGATCTCAAAGCGATCTTCGGCCTGGATCCAGCCGCCGCCATCGCCTACCTCAAGGG 361 Query 17058 CAAGGGATTCGCCACTACTTGGAACTGGCACGA--TGTT-GACGCGGCCACCCACGCCCG 17114 ||| || | || ||| ||| | ||||| || || | || |||||| |||| || Sbjct 362 CAAAGGCTATGCGGTTACCTGGGATTGGCAGGACATGCTCGATGCGGCC---CACGACCA 418 Query 17115 TGCTCTGACCGTTGCCAGAGCAGCACGCCTGGACGTGCTCCAGGACATTCGCAACGCCCT 17174 || | |||||||||| || |||||||| ||||| |||||| ||| | | | Sbjct 419 AGCGTTCACCGTTGCCAAGGCCATGCGCCTGGATCTGCTCTCGGACATCCGCGAATCATT 478 Query 17175 GGTCGAGAACC-TGGAGCGCGGCGAGACGCTACGAGATTTCAAGCGCAACCTGCGGCCGA 17233 || ||| || || || ||| |||| || | | |||| | |||| ||| Sbjct 479 GGA-GAGCGCCCTGCAGGAAGGCAAGACCCTGCAGCAGTTCACCAAGGAACTGCAGCCTG 537 Query 17234 CCCTGGAGGCGAAGGGCTGGTGGGGTCGCCAGGTGGTAGTCGC--GCCGGATGGAGGCGC 17291 ||||||| | || |||||||| ||||| | |||| ||| | | ||| Sbjct 538 TCCTGGAGCAACAAGGTTGGTGGGGCAAGCAGGTCCTGGTCGACAGCCAGGGCAATGCG- 596 Query 17292 CGAGGTCGCTCAACTGGGCAGCCCGCGCCGCCTGGATACCATTTACCAGACCAACATGCA 17351 ||| | | || ||||| ||||| ||||| || | || || |||||||||||| |||| Sbjct 597 -GAGATGGTCCAGCTGGGTAGCCCACGCCGGCTTAAGACGATCTACCAGACCAACCTGCA 655 Query 17352 GTCGGCGTATATGGCAGGGCGTTACGCGGCTGCCTACGAGGCCAGGG---AAACCCACCC 17408 | || |||||||| || || | | || | |||| || || | ||||| || Sbjct 656 GAGCGCCTATATGGCCGGTCGCAAATCCGC---CATGGAGGACACGGTCGAGACCCATCC 712 Query 17409 TTACTGGATGTATGTAGCGGTGATGGACGGCGTTACCCGACCCAGCCATGCCGCCCTGCA 17468 ||||||| || | ||||||||||| ||| |||||||| |||||||| || || | Sbjct 713 GTACTGGAGCTACATCGCGGTGATGGATGGCAAGACCCGACCTAGCCATGCTGCGCTCAA 772 Query 17469 TGGGAAGGTCTTCCGCTGGGACGATCCAATCTGGCAGCACATCACCCCGCCCAATGGCTA 17528 || ||| | ||| ||||| || |||||| |||| ||||||||| || | Sbjct 773 CGGTGTGGTGTACCGACATGACGACCCGATCTGGTCCACCATCTTCCCGCCCAACGGGTT 832 Query 17529 CAACTGCCGGTGCCG 17543 |||||||| ||||| Sbjct 833 TAACTGCCGCTGCCG 847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117807219808992