Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_020200.1 Length=36429 Score E Sequences producing significant alignments: (Bits) Value seq7292 188 2e-43 seq118405 107 4e-19 >seq7292 Length=1256 Score = 188 bits (208), Expect = 2e-43 Identities = 379/554 (68%), Gaps = 16/554 (3%) Strand=Plus/Plus Query 15621 GGCCGATCTGCGGGCCATCTTCGCCCTGCGGCCGGCCGCCGCCATCGAGTACCTGGAGCG 15680 ||||||||| || ||||||| |||| || ||||||||||||| ||||| || | Sbjct 302 GGCCGATCTCAAAGCGATCTTCGGCCTGGATCCAGCCGCCGCCATCGCCTACCTCAAGGG 361 Query 15681 CAAGGGCTTCGCGATCACCTGGAACTGGCATGACGTTGACGCGGCCACCCACGCCCGCGC 15740 ||| |||| ||| | |||||| | ||||| ||| | || || |||||| || || Sbjct 362 CAAAGGCTATGCGGTTACCTGGGATTGGCAGGACATGCTCGATGCGGCCCACGACCAAGC 421 Query 15741 TCTGACCGTTGCCAGAGCAGCACGCCTGGACGTGCTCCAGGACATTCGCGACGCCCTGGT 15800 | |||||||||| || |||||||| ||||| |||||| ||||| | ||| Sbjct 422 GTTCACCGTTGCCAAGGCCATGCGCCTGGATCTGCTCTCGGACATCCGCGAATCATTGG- 480 Query 15801 CGAG-AACCTGGAGCGCGGCGAGACGCTACGAGACTTCAAGCGAA--ACCTGCGGCCGAC 15857 ||| |||| || ||| |||| || | | |||| | || | |||| ||| Sbjct 481 AGAGCGCCCTGCAGGAAGGCAAGACCCTGCAGCAGTTCA--CCAAGGAACTGCAGCCTGT 538 Query 15858 CCTGGAGGCGAAAGGCTGGTGGGGTCGCCAGGTGGTAGTCG--CGCCAGATGGCGGCGCC 15915 ||||||| |||| |||||||| ||||| | |||| ||||| ||| || Sbjct 539 CCTGGAGCAACAAGGTTGGTGGGGCAAGCAGGTCCTGGTCGACAGCCAG--GGCAATGCG 596 Query 15916 GAGGTTGCACAACTGGGCAGCCCGCGCCGCCTGGATACCATCTACCAGACCAACATGCAG 15975 ||| | | || ||||| ||||| ||||| || | || ||||||||||||||| ||||| Sbjct 597 GAGATGGTCCAGCTGGGTAGCCCACGCCGGCTTAAGACGATCTACCAGACCAACCTGCAG 656 Query 15976 TCGGCCTACATGGCAGGGCGCTACGCGGCCGCCTACGAAGCCAGG---GAAACCCACCCT 16032 ||||| ||||| || ||| | ||||| || | || | || ||||| || Sbjct 657 AGCGCCTATATGGCCGGTCGCAA---ATCCGCCATGGAGGACACGGTCGAGACCCATCCG 713 Query 16033 TACTGGATGTATGTGGCGGTGATGGATGGCGTTACCCGGGCCAGCCATGCCGCCCTGCAT 16092 ||||||| || | ||||||||||||||| ||||| | |||||||| || || | Sbjct 714 TACTGGAGCTACATCGCGGTGATGGATGGCAAGACCCGACCTAGCCATGCTGCGCTCAAC 773 Query 16093 GGGAAAGTGTTCAGGTGGGACGATCCGATCTGGCAGCACATCACCCCGCCCAATGGCTAC 16152 || |||| | | ||||| ||||||||| |||| ||||||||| || | Sbjct 774 GGTGTGGTGTACCGACATGACGACCCGATCTGGTCCACCATCTTCCCGCCCAACGGGTTT 833 Query 16153 AACTGCCGGTGCCG 16166 |||||||| ||||| Sbjct 834 AACTGCCGCTGCCG 847 >seq118405 Length=3401 Score = 107 bits (118), Expect = 4e-19 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 24338 AGCGCCGAGGCGGCCCTGGTCCAGTTCGGCCAGGCTCTGGCGTCGGGCGTTCTGCGCGGT 24397 || || || || || |||| |||||||| || ||| |||| || || || || |||||| Sbjct 1402 AGTGCAGAAGCTGCTTTGGTGCAGTTCGGTCAAGCTTTGGCTTCAGGTGTGCTTCGCGGT 1461 Query 24398 GAGGAATTCAACTCGGTCAGCGAGCAGGCGCCCGCGCTGCTGAAAGCAATTGCCGATGGC 24457 || ||||| || || | ||||| || || | | | |||||||| ||| ||| Sbjct 1462 GAAGAATTTAATTCAATTTCAGAGCAAGCACCGGGTTTATTAAAAGCAATCGCCACAGGC 1521 Query 24458 CTCAACGTCAATATCGGCGAGCTTCGCAAGATGGCGAACGAAGGCCAGTTGACAGCTGAT 24517 | ||||||||||| ||||| ||||| || ||||| || ||||| || ||| | |||||| Sbjct 1522 TTAAACGTCAATATTGGCGAACTTCGTAAAATGGCAAATGAAGGTCAATTGTCTGCTGAT 1581 Query 24518 GT 24519 || Sbjct 1582 GT 1583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116153852341408