Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq119091 113 5e-20 >seq119091 Length=4924 Score = 113 bits (124), Expect = 5e-20 Identities = 164/228 (72%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || ||||| ||||||||||| || ||||| ||||| ||||| ||||| || || || Sbjct 1681 TGAGCAGTGCAAATGTTACTGGTAGCCTTGTCCCTTCTGATATGTTGCTCCCTTGTCTGC 1622 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTG--TC--CACTGACTGACCTACAATTCT 139432 | || | | |||||| || || || | || |||| || ||| | |||||| Sbjct 1621 ATGGCCATACGCAGTGCAGGCTTCCC--CGAAGAATCAACACTTAC--ACCAATAATTCT 1566 Query 139433 GCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCC 139492 ||||| ||| | ||||| |||| | | ||| || | ||| || |||||||||||||| Sbjct 1565 TCCAGGCATCATCCTCTTGTACTCCTGAGATGTGGCCAGGAAAGCTGCATGAGGACCTCC 1506 Query 139493 GTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATC 139540 || ||||| || | ||||||||| ||| | ||| || ||||||| Sbjct 1505 ATACCCCATCGGCACACCAAACCTCTGCGCAGAACCCACCACAATATC 1458 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | ||||||||| || ||||| |||||||| || ||||||||||| Sbjct 3881 ACACCAATAGGACCCATGCCAGGACCACCGCCTCCGTGTGGAATGCAAAATGTCTTATGG 3822 Query 138243 AAATTTAGATGACATACATCTGCACCA 138269 | || ||||| || ||||| || ||| Sbjct 3821 AGGTTGAGATGGCAGACATCAGCTCCA 3795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577442168100480