Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4302 87.8 2e-12 seq144477 82.4 9e-11 >seq4302 Length=1545 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/192 (70%), Gaps = 7/192 (4%) Strand=Plus/Minus Query 65028 GGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCT--CCTTCGCCGAGCGCCTT 65085 |||| | ||||| |||||||| | ||| | |||| | ||||| ||||| | Sbjct 1545 GGCGCAGTGGGCCCTGAAATGGATCGAC-----GGCTCGGAGACTTTCGCGGAGCGGATC 1491 Query 65086 TTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGG 65145 | || || || || |||||||| ||||||||||| || |||||||| || | |||| Sbjct 1490 GTGGCCTTCGCCTGCGTGGAGGGGATCTTCTTCTCGGGAAGCTTCTGCGCGATATTTTGG 1431 Query 65146 TTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGAT 65205 | || ||||| || | ||||| || || |||||| || || | || || |||||| Sbjct 1430 CTAAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCGCGAGAT 1371 Query 65206 GAGGGTCTCCAC 65217 || || |||||| Sbjct 1370 GAAGGCCTCCAC 1359 >seq144477 Length=2901 Score = 82.4 bits (90), Expect = 9e-11 Identities = 191/282 (68%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTC---CCA 175371 || ||||| ||||||||||| || || || || | || ||||| | || | || Sbjct 769 CCCGGTACCGGAAAGACCCTGCTGGCGCGTGCGGTTGCTGGTGAGGC---TGGCACGCCG 825 Query 175372 TTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGG 175431 ||| || ||| | || | | ||||||||| ||||||| || ||||| || || Sbjct 826 TTCTTCTCCTGCGCGGCGTCGGAGTTTGTGGAGCTGTTTGTGGGAGTGGGAGCGTCGAGA 885 Query 175432 GTTCGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGA 175490 || | || | ||||| | ||| | ||| | || || ||||| || |||||||| Sbjct 886 GTGAGGGACTTGTTTGAGAAGGCCAAGTCGAAAGCGCCC-TGCATTGTGTTTATTGATGA 944 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGA 175548 |||||||||||| || | ||| | | || || ||| | | | |||||| ||||| Sbjct 945 GATTGATGCGGTTGGGAGGCAGAGAGGGGCGGGGATGGGAGG--TGGAAATGATGAGAGG 1002 Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 || || || |||||||| | | || |||||||| || ||| Sbjct 1003 GAGCAGACTATTAATCAGTTGTTGACGGAGATGGACGGGTTT 1044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594966140229120