Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06]
215,024 sequences; 206,414,839 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq16096 107 3e-18
seq161123 105 1e-17
seq149362 105 1e-17
seq210616 100 4e-16
seq204338 98.7 1e-15
seq20564 89.7 8e-13
seq29583 87.8 3e-12
>seq16096
Length=889
Score = 107 bits (118), Expect = 3e-18
Identities = 152/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | || || | || || ||||| || || || ||||| ||| |||
Sbjct 367 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 426
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || |||||| |||||| || ||||| || || || || ||||| ||
Sbjct 427 GACACCATTGATAATGTGAAAGCTAAAATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 486
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || ||||||| ||| ||||||||||| || ||| || || | |||| ||||||
Sbjct 487 CAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCAGACTATAAT 546
Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032
|| || ||| ||| | || || || || |||
Sbjct 547 AT-TCAAAAGGAGTCCACTCTGCACTTGGTG 576
>seq161123
Length=4290
Score = 105 bits (116), Expect = 1e-17
Identities = 150/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| | || || ||||| || ||||||||||| || ||||| ||| ||
Sbjct 2551 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 2492
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | ||| || || || ||||| || || ||||||||||| || ||||| ||
Sbjct 2491 AGACACAATTGATAATGTCAAGGCGAAAATTCAGGACAAAGAAGGCATTCCCCCAGACCA 2432
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| || | || | ||| || ||||||||||| ||| || || | ||||||| ||
Sbjct 2431 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGTAGGACACTGGCAGATTACAA 2372
Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTG 156032
||| || ||| | || || ||||| |||
Sbjct 2371 CATACAGAAGGAGTCAACTCTGCATTTGGTG 2341
Score = 95.1 bits (104), Expect = 2e-14
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || | |||||||| || || || || || || || ||||
Sbjct 2322 ATGCAGATCTTTGTGAAGACCCTCACTGGAAAGACCATAACCTTGGAGGTAGAGAGTTCT 2263
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || |||||| || || || || || || ||||| ||||| || ||
Sbjct 2262 GATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAG 2203
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | || | ||| ||||||||||| |||||| | | ||| || ||||||| ||
Sbjct 2202 CAGAGGCTCATATTTGCTGGTAAGCAGCTTGAAGATGGCCGGACTCTAGCAGATTACAAC 2143
Query 156003 ATATCCAAA-GAGGCGACGCTTCA 156025
|| || ||| ||| | || |||||
Sbjct 2142 AT-TCAAAAGGAGTCAACCCTTCA 2120
>seq149362
Length=6446
Score = 105 bits (116), Expect = 1e-17
Identities = 150/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| | || || ||||| || ||||| ||||| || ||||| ||| ||
Sbjct 2199 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 2258
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | ||| ||||| || || || || || ||||||||||| || ||||| ||
Sbjct 2259 AGACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 2318
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| || | |||| ||| || |||||||| || || ||| || | ||||||| ||
Sbjct 2319 GCAGAGGCTCATTTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 2378
Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTG 156032
|| |||||| |||| || ||||| |||
Sbjct 2379 CATTCAGAAAGAGTCGACTCTGCATTTGGTG 2409
Score = 104 bits (114), Expect = 3e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || ||| | |||||||| || || || || || || || ||||
Sbjct 2428 ATGCAGATCTTTGTGAAGACACTTACTGGAAAGACCATAACCTTGGAGGTAGAGAGTTCT 2487
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || |||||| || || || || || |||||||| |||||||| ||
Sbjct 2488 GATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAG 2547
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | || | ||| ||||||||||| |||||| || ||| | | ||||| ||
Sbjct 2548 CAGAGGCTCATATTTGCTGGTAAGCAGCTTGAAGATGGGAGGACTCTGGCGGATTACAAC 2607
Query 156003 ATATCCAAA-GAGGCGACGCTTCA 156025
|| || ||| ||| |||| |||||
Sbjct 2608 AT-TCAAAAGGAGTCGACCCTTCA 2630
>seq210616
Length=3554
Score = 100 bits (110), Expect = 4e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | ||||| ||||| ||||| || || ||||| || || || |||
Sbjct 3343 ATGCAAATCTTTGTCAAAACTTTGACAGGAAAGACCATAACATTGGAGGTAGAGAGTTCA 3284
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || |||||| ||| || || || || || ||||| ||||| || |
Sbjct 3283 GATACAATTGACAATGTGAAAGCTAAGATTCATGACAAGGAGGGCATCCCTCCGGACAAG 3224
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||| | || | || || ||||||||||| ||| || ||| | ||||||| ||
Sbjct 3223 CAAAGGCTCATATTCGCTGGAAAGCAGCTCGAGGATGGGAGGACTCTTGCAGATTACAAC 3164
Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025
|| | || ||| | || |||||
Sbjct 3163 ATTTAGAAGGAGTCCACCCTTCA 3141
>seq204338
Length=3429
Score = 98.7 bits (108), Expect = 1e-15
Identities = 99/127 (78%), Gaps = 4/127 (3%)
Strand=Plus/Plus
Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972
|| ||||| |||||||| ||||| || ||||| |||||||||| |||||||||||| |
Sbjct 2923 CAGGATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTG 2982
Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCATTTAG 156030
|||||| |||||| | |||||||| | ||||||| ||| | || ||||| |||
Sbjct 2983 GAAGATGGAAGAACTCTTGCAGATTAT--GACATCCAAAAGGAGTCAACTCTTCACCTAG 3040
Query 156031 TGTTAAG 156037
| |||||
Sbjct 3041 TTTTAAG 3047
>seq20564
Length=789
Score = 89.7 bits (98), Expect = 8e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972
|| ||||| |||||||| |||||||| || || ||| |||||| ||| ||||||||| |
Sbjct 653 CAGGATAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTG 594
Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTG 156032
|||||| |||| | ||||||||||||| |||||| | || || || | |||
Sbjct 593 GAAGATGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTG 534
Query 156033 TTAAGATTAAGAGGCGG 156049
|| || || || || ||
Sbjct 533 TTGAGGTTGAGGGGAGG 517
>seq29583
Length=650
Score = 87.8 bits (96), Expect = 3e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || |||| || | ||||| || || || || | || || ||| |||
Sbjct 264 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 323
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || || || ||| ||||| |||||||| |||||||| || ||||| ||
Sbjct 324 GACACCATCGACAATGTCAAAGCCAAAATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 383
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978
|||||| |||||| ||| || ||||||||||| |||
Sbjct 384 CAAAGACTGATTTTTGCTGGAAAGCAGCTCGAGGAT 419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 729904874438400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |