Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq134381 100 6e-16 seq204338 96.9 7e-15 seq210190 91.5 3e-13 seq149362 89.7 1e-12 >seq134381 Length=6558 Score = 100 bits (110), Expect = 6e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | || | ||| | |||||| |||||||||||| | Sbjct 3879 ACCACCACGGAGACGCAGAACAAGGTGCAGAGTGGACTCTTTCTGGATATTATAATCGGC 3938 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| ||||| || || || || ||||| || || || ||||| || || Sbjct 3939 CAAAGTACGACCATCCTCCAACTGCTTTCCGGCGAAGATCAACCTTTGCTGATCCGGCGG 3998 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || |||||||| || || ||| ||||| || | ||| || ||||| Sbjct 3999 GATACCCTCCTTATCTTGAATCTTGGCTTTGACATTGTCAATGGTATCAGAGCTCTCTAC 4058 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || ||||| || || || | ||| | |||||| Sbjct 4059 CTCGAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAACCTGCAT 4106 >seq204338 Length=3429 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||| | ||||| || || | ||| |||| || | ||| | ||| || ||| | |||| Sbjct 3065 ATAGTTCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTCATAA 3006 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || | | |||| | |||| |||||||| ||||| ||||| || ||||||||||||||| Sbjct 3005 TCTGCAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCA 2946 Query 192424 GGTGGTATTCCTTCTTTATCTTG 192446 || || || ||||| ||||| || Sbjct 2945 GGAGGGATGCCTTCCTTATCCTG 2923 >seq210190 Length=6381 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | || | |||| ||| || |||||||||||| | Sbjct 3215 ACCACCACGGAGACGAAGAACAAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCGGC 3156 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| ||||| || || || || ||||| || || || ||||| || || Sbjct 3155 CAAAGTACGACCATCCTCCAACTGCTTTCCGGCGAAGATCAACCTTTGCTGATCCGGCGG 3096 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || |||||||| | || ||| ||||| || | ||| || || || Sbjct 3095 GATACCCTCCTTATCTTGAACCTTGGCTTTGACATTGTCAATGGTATCAGAGCTCTCCAC 3036 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || ||||| || || || | ||| |||||||| Sbjct 3035 CTCCAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATCTGCAT 2988 >seq149362 Length=6446 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || ||||| | ||| | |||||| ||| || || |||| | ||| || |||| || Sbjct 1496 ACCAAATGGAGAGTGGACTCTTTTTGGATGTTGTAGTCAGCGAGTGTCCGCCCATCCTCA 1437 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | || || ||||||||||| | || ||||| || || || ||||| || || ||||| Sbjct 1436 AGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGG 1377 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || || ||| ||||| |||| || || ||| || || || || ||||| || Sbjct 1376 ATCTTTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCAACCTCGAGGGTGATGGTCTTG 1317 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||||| | ||| |||||||| Sbjct 1316 CCTGTGAGGGTTTTCACAAAGATCTGCAT 1288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981767762522400