Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq204338 95.1 2e-14 seq149362 87.8 3e-12 seq29583 87.8 3e-12 >seq204338 Length=3429 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| | ||||| || || | ||| |||| || | ||| | ||| || || | || Sbjct 3067 TCATAGTTCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTCAT 3008 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| | || || | | || |||||||| ||||| |||||||| ||||||||||| | Sbjct 3007 AATCTGCAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGAT 2948 Query 171955 CAGGTGGTATTCCTTCTTTATCTTG 171979 |||| || || ||||| ||||| || Sbjct 2947 CAGGAGGGATGCCTTCCTTATCCTG 2923 >seq149362 Length=6446 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || ||||| | ||| | |||||| ||| || |||||| Sbjct 2429 ATCCCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCT 2370 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | |||| || | || || || |||||||| | ||||| ||||| || Sbjct 2369 GCCAGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCTGGG 2310 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || || || || || ||| || || ||||| ||| Sbjct 2309 GGAATGCCTTCTTTGTCCTGAATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTTTCC 2250 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | |||||||||||| || || || || || | || || |||||| Sbjct 2249 ACTTCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCATT 2199 >seq29583 Length=650 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || ||||||||||| | ||| || ||||| || || || ||||| |||||||| ||| Sbjct 409 TGCTTTCCAGCAAAAATCAGTCTTTGCTGGTCTGGGGGAATGCCTTCCTTATCTTGGATT 350 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||| ||||| || || || || ||| || || || || ||||| || ||| Sbjct 349 TTGGCTTTGACATTGTCGATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTGCCA 290 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || |||| ||| |||||||| Sbjct 289 GTGAGAGTCTTAACGAAGATCTGCAT 264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902703175459200